miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 161764 0.72 0.587728
Target:  5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3'
miRNA:   3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 146717 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 55017 0.72 0.53834
Target:  5'- gGCGggaUGGGGgcGGGCGGGAUggGGg -3'
miRNA:   3'- -UGCag-GCUCCuaCCCGUCCUGuuCCg -5'
28837 3' -57.3 NC_006146.1 + 167369 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152873 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 42371 0.72 0.548119
Target:  5'- cGCG-CCGccAGGGUGGGCgaGGGGCGccccaGGGCc -3'
miRNA:   3'- -UGCaGGC--UCCUACCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 170164 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 52501 0.72 0.576769
Target:  5'- gACGgCCGAguuGGAgaucUGGGCgggaaagAGGACGAGGCc -3'
miRNA:   3'- -UGCaGGCU---CCU----ACCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149795 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 21373 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 28030 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCa -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 18295 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 44126 0.71 0.627828
Target:  5'- cCGg-CGAGGAggggGGGCAGGACGuGcGCa -3'
miRNA:   3'- uGCagGCUCCUa---CCCGUCCUGUuC-CG- -5'
28837 3' -57.3 NC_006146.1 + 24451 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15217 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 127836 0.71 0.61778
Target:  5'- aGCcUCCccugGAGGGUGGGCuuGGGCAGccGGCg -3'
miRNA:   3'- -UGcAGG----CUCCUACCCGu-CCUGUU--CCG- -5'
28837 3' -57.3 NC_006146.1 + 32006 0.71 0.597723
Target:  5'- cACG-CUagGAGGAcagagGGGCcucGGGACGAGGCg -3'
miRNA:   3'- -UGCaGG--CUCCUa----CCCG---UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 112720 0.71 0.61778
Target:  5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3'
miRNA:   3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 28222 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCg -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 27529 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.