miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 35199 0.66 0.996581
Target:  5'- -gGAGcgCuUCGACCCGAgggaCCUGGAGGUc -3'
miRNA:   3'- gaUUCa-G-AGCUGGGCUa---GGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 28475 0.66 0.996581
Target:  5'- gUGAGUUcaUCGcgcaggaccACCCGAUCCCGu---- -3'
miRNA:   3'- gAUUCAG--AGC---------UGGGCUAGGGCuuuua -5'
2884 5' -49.8 NC_001493.1 + 110509 0.66 0.996581
Target:  5'- -aAGGUCga-GCCCGcgCCCGGAGu- -3'
miRNA:   3'- gaUUCAGagcUGGGCuaGGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 95853 0.66 0.995972
Target:  5'- -aGAGUCaCGAucgcaacaucCCCGcUCCCGAGGAa -3'
miRNA:   3'- gaUUCAGaGCU----------GGGCuAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 21924 0.66 0.995277
Target:  5'- -cAGGUUUccCGACCCGGguacgUCCCGAu--- -3'
miRNA:   3'- gaUUCAGA--GCUGGGCU-----AGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 32726 0.66 0.994816
Target:  5'- --cGGUC-CGGCCCGAgaccccuucuucgucUCCCGGGc-- -3'
miRNA:   3'- gauUCAGaGCUGGGCU---------------AGGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 67026 0.66 0.994488
Target:  5'- ---uGUUUCGugCCGAUcagcCCCGGGAu- -3'
miRNA:   3'- gauuCAGAGCugGGCUA----GGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 133267 0.66 0.994488
Target:  5'- ---cGUCUCG-CCCGGUCCgugCGAGu-- -3'
miRNA:   3'- gauuCAGAGCuGGGCUAGG---GCUUuua -5'
2884 5' -49.8 NC_001493.1 + 17713 0.66 0.994488
Target:  5'- ---cGUCUCG-CCCGGUCCgugCGAGu-- -3'
miRNA:   3'- gauuCAGAGCuGGGCUAGG---GCUUuua -5'
2884 5' -49.8 NC_001493.1 + 19957 0.66 0.993595
Target:  5'- ----cUCUgG-UCCGGUCCCGAAGAUg -3'
miRNA:   3'- gauucAGAgCuGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 59883 0.66 0.993595
Target:  5'- -cGGG-CUaccCGACCCcuauGAUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGA---GCUGGG----CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 119854 0.67 0.99259
Target:  5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3'
miRNA:   3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 4300 0.67 0.99259
Target:  5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3'
miRNA:   3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 26374 0.67 0.991464
Target:  5'- -cGGGUUUCGGCCCcagCCCGGu--- -3'
miRNA:   3'- gaUUCAGAGCUGGGcuaGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 129132 0.67 0.991464
Target:  5'- -cGAGaC-CGACCCG-UCCCGAGGc- -3'
miRNA:   3'- gaUUCaGaGCUGGGCuAGGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 13578 0.67 0.991464
Target:  5'- -cGAGaC-CGACCCG-UCCCGAGGc- -3'
miRNA:   3'- gaUUCaGaGCUGGGCuAGGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 110791 0.67 0.990206
Target:  5'- -cGAGUUUCGAagcggUCGAUCCCGGcgGUa -3'
miRNA:   3'- gaUUCAGAGCUg----GGCUAGGGCUuuUA- -5'
2884 5' -49.8 NC_001493.1 + 9124 0.68 0.983668
Target:  5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3'
miRNA:   3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 124679 0.68 0.983668
Target:  5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3'
miRNA:   3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 88507 0.68 0.981609
Target:  5'- gUGGGUUgacacaCGACCCGAaccUCUCGGAAAg -3'
miRNA:   3'- gAUUCAGa-----GCUGGGCU---AGGGCUUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.