Results 1 - 20 of 526 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28841 | 5' | -57.8 | NC_006146.1 | + | 101927 | 0.66 | 0.889036 |
Target: 5'- cGCCGGuGGCC---GCgGGGGCGGUgaccgaugagacaacGGCg -3' miRNA: 3'- -CGGCC-CUGGcuuUGgUUCCGUCG---------------CCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 108534 | 0.66 | 0.886373 |
Target: 5'- gGCCaGGGGCCu---CUccGGC-GCGGCg -3' miRNA: 3'- -CGG-CCCUGGcuuuGGuuCCGuCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 59987 | 0.66 | 0.886373 |
Target: 5'- cCUGGGGgucaUgGAGugCAAGGCcaacGCGGCc -3' miRNA: 3'- cGGCCCU----GgCUUugGUUCCGu---CGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 137914 | 0.66 | 0.886373 |
Target: 5'- gGCCGGGGguuCCGG-----GGGCAGCcGCg -3' miRNA: 3'- -CGGCCCU---GGCUuugguUCCGUCGcCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 156546 | 0.66 | 0.886373 |
Target: 5'- cCCGGGAcCCGAccccACCAgcaGGGCcGCaacGGCc -3' miRNA: 3'- cGGCCCU-GGCUu---UGGU---UCCGuCG---CCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 29583 | 0.66 | 0.886373 |
Target: 5'- aGCUGGGACagGAccCCGGGGgcuCAGCcaGGCu -3' miRNA: 3'- -CGGCCCUGg-CUuuGGUUCC---GUCG--CCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 84937 | 0.66 | 0.886373 |
Target: 5'- gGuuGGGACgGAGgcGCCucgcuuGGgGGgGGCa -3' miRNA: 3'- -CggCCCUGgCUU--UGGuu----CCgUCgCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 113250 | 0.66 | 0.886373 |
Target: 5'- aCCGGGAgaCUGGAGCCucGGUaAGUgaaGGCa -3' miRNA: 3'- cGGCCCU--GGCUUUGGuuCCG-UCG---CCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 115722 | 0.66 | 0.886373 |
Target: 5'- cGCCGcGGCCGcAGCCuGGGaC-GCGGUc -3' miRNA: 3'- -CGGCcCUGGCuUUGGuUCC-GuCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 143556 | 0.66 | 0.886373 |
Target: 5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3' miRNA: 3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 146634 | 0.66 | 0.886373 |
Target: 5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3' miRNA: 3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 149711 | 0.66 | 0.886373 |
Target: 5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3' miRNA: 3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 152789 | 0.66 | 0.886373 |
Target: 5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3' miRNA: 3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 155867 | 0.66 | 0.886373 |
Target: 5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3' miRNA: 3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 61572 | 0.66 | 0.886373 |
Target: 5'- cCCGaGGGCCacgcugagGAAgaGCCGGcuGCAGCGGCc -3' miRNA: 3'- cGGC-CCUGG--------CUU--UGGUUc-CGUCGCCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 17606 | 0.66 | 0.886373 |
Target: 5'- cCCGGGcCUGguGCCuGGaGCAGaaaaGGCa -3' miRNA: 3'- cGGCCCuGGCuuUGGuUC-CGUCg---CCG- -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 156965 | 0.66 | 0.885702 |
Target: 5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3' miRNA: 3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 153887 | 0.66 | 0.885702 |
Target: 5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3' miRNA: 3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 150809 | 0.66 | 0.885702 |
Target: 5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3' miRNA: 3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5' |
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28841 | 5' | -57.8 | NC_006146.1 | + | 144654 | 0.66 | 0.885702 |
Target: 5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3' miRNA: 3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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