miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 41227 0.66 0.997565
Target:  5'- -gCGGCgcUGAAGAGAccGGCCCUg--- -3'
miRNA:   3'- ggGUCGacACUUCUCU--UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 28817 0.66 0.997565
Target:  5'- gCCCAGCUuuccguguuucaGUGGAGAGGGuGCUgUcaUAAGc -3'
miRNA:   3'- -GGGUCGA------------CACUUCUCUU-CGGgA--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 71118 0.66 0.997565
Target:  5'- aCUAGCa-UGGAGAGAuuggAGCCCUcGGGc -3'
miRNA:   3'- gGGUCGacACUUCUCU----UCGGGAaUUC- -5'
28852 3' -50.3 NC_006146.1 + 43982 0.66 0.99711
Target:  5'- gCCAGCg--GGAGAGGAGgCUgagUAGGc -3'
miRNA:   3'- gGGUCGacaCUUCUCUUCgGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 144919 0.66 0.995988
Target:  5'- aCCCAGUggcagcuuuauUGUGAgaccauuuacAGAGu-GCCCUUGGa -3'
miRNA:   3'- -GGGUCG-----------ACACU----------UCUCuuCGGGAAUUc -5'
28852 3' -50.3 NC_006146.1 + 106941 0.66 0.995988
Target:  5'- gCCGGCUGagugugcuuucUGGAGAGggGCUa----- -3'
miRNA:   3'- gGGUCGAC-----------ACUUCUCuuCGGgaauuc -5'
28852 3' -50.3 NC_006146.1 + 67860 0.66 0.995306
Target:  5'- uCCUAacggcGCUGUau-GAGAGGCCCUgcaaGAGg -3'
miRNA:   3'- -GGGU-----CGACAcuuCUCUUCGGGAa---UUC- -5'
28852 3' -50.3 NC_006146.1 + 145642 0.66 0.995306
Target:  5'- uCCUGGCUG-GAGacGGGcGAGCCaCUUAGGa -3'
miRNA:   3'- -GGGUCGACaCUU--CUC-UUCGG-GAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 167646 0.66 0.995306
Target:  5'- gCCCGGCgcGUGccG-GggGCCCggGGGc -3'
miRNA:   3'- -GGGUCGa-CACuuCuCuuCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 121361 0.66 0.995306
Target:  5'- gCCGGC-GUGGccuccgcccccAGAGGAGCCCc---- -3'
miRNA:   3'- gGGUCGaCACU-----------UCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 33267 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33389 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCgccUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33143 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 133005 0.66 0.99445
Target:  5'- cCCCAGCgccGUGAAGgcaGGAcucucccAGCCCg---- -3'
miRNA:   3'- -GGGUCGa--CACUUC---UCU-------UCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 143258 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 149414 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 152492 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 155570 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 146336 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 133526 0.67 0.99366
Target:  5'- -aCAGuCUG-GAAGuGAGGCCCUUu-- -3'
miRNA:   3'- ggGUC-GACaCUUCuCUUCGGGAAuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.