miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 3' -65.4 NC_006146.1 + 130225 0.66 0.510049
Target:  5'- cACCucaGGGUGGUGGC-Ca-GGCCGUUg -3'
miRNA:   3'- uUGG---CCCACCGCCGaGggCCGGCAGu -5'
28853 3' -65.4 NC_006146.1 + 72364 0.66 0.510049
Target:  5'- gGACCGGcUGGCGGCgacgaaaCCCGaGUCGg-- -3'
miRNA:   3'- -UUGGCCcACCGCCGa------GGGC-CGGCagu -5'
28853 3' -65.4 NC_006146.1 + 36233 0.66 0.510049
Target:  5'- cGGCCGGGgaggaggcagGGCGGCUUCUGgagaGCUGUgAa -3'
miRNA:   3'- -UUGGCCCa---------CCGCCGAGGGC----CGGCAgU- -5'
28853 3' -65.4 NC_006146.1 + 131066 0.66 0.491935
Target:  5'- cGCCGGcccacUGuGCGGCcgaggccgCCgGGCCGUCAa -3'
miRNA:   3'- uUGGCCc----AC-CGCCGa-------GGgCCGGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 44080 0.66 0.491935
Target:  5'- uGCCGGGacuggGGUGGUUCCaccucgGGCCG-CGc -3'
miRNA:   3'- uUGGCCCa----CCGCCGAGGg-----CCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 136810 0.66 0.491037
Target:  5'- cGCUGGGUcGCGGCUgccccccgggaccCCCGGCCc--- -3'
miRNA:   3'- uUGGCCCAcCGCCGA-------------GGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 109288 0.67 0.46534
Target:  5'- uAGCUGGGagGGaucuCGGC-CCCGGCCG-CGg -3'
miRNA:   3'- -UUGGCCCa-CC----GCCGaGGGCCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 112453 0.67 0.46534
Target:  5'- cGGCCGuGGUGGUcacugGGCUUgUGGUCGUUg -3'
miRNA:   3'- -UUGGC-CCACCG-----CCGAGgGCCGGCAGu -5'
28853 3' -65.4 NC_006146.1 + 166354 0.67 0.46534
Target:  5'- uAGCUGGGggagguagucGGCGGCUgCCGGCaccgagaugGUCAc -3'
miRNA:   3'- -UUGGCCCa---------CCGCCGAgGGCCGg--------CAGU- -5'
28853 3' -65.4 NC_006146.1 + 15410 0.67 0.46534
Target:  5'- cGCCaGGUGGCcucagaggGGCUggCCCGGCUG-CAg -3'
miRNA:   3'- uUGGcCCACCG--------CCGA--GGGCCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 44210 0.67 0.46011
Target:  5'- cAGCCGGG-GGCGGUgccuuggugaccgucUCCUcuGGCCGggCGg -3'
miRNA:   3'- -UUGGCCCaCCGCCG---------------AGGG--CCGGCa-GU- -5'
28853 3' -65.4 NC_006146.1 + 112217 0.67 0.456641
Target:  5'- gGACaGGGUGGCGGC-CUgGGUgGUUg -3'
miRNA:   3'- -UUGgCCCACCGCCGaGGgCCGgCAGu -5'
28853 3' -65.4 NC_006146.1 + 169070 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 27623 0.67 0.448031
Target:  5'- cACUGGGUGGCcagggaaGUUCCgGGCCagcGUCAc -3'
miRNA:   3'- uUGGCCCACCGc------CGAGGgCCGG---CAGU- -5'
28853 3' -65.4 NC_006146.1 + 170002 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 167206 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 168138 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 72565 0.67 0.431085
Target:  5'- gGACCGGGacgGGCcGCgCCCGGCCc--- -3'
miRNA:   3'- -UUGGCCCa--CCGcCGaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 65704 0.67 0.422753
Target:  5'- cACCGGGcaccccCGGCUcCCCGGCCccgGUCAc -3'
miRNA:   3'- uUGGCCCacc---GCCGA-GGGCCGG---CAGU- -5'
28853 3' -65.4 NC_006146.1 + 116157 0.67 0.422753
Target:  5'- cACUGGGUGaCGGC-CCUGGuCCGcUCAg -3'
miRNA:   3'- uUGGCCCACcGCCGaGGGCC-GGC-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.