miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 47245 0.66 0.986659
Target:  5'- uGGcGCGGgucgacGUGGCcccuggcccGGGUGACGAGGUc -3'
miRNA:   3'- -CCaCGUCaa----CGUCG---------UCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 39773 0.66 0.986659
Target:  5'- --cGCAGacGCGGCAGGUG-Cu-GGCu -3'
miRNA:   3'- ccaCGUCaaCGUCGUCCACuGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 11362 0.66 0.984946
Target:  5'- uGGcGCAGgcGCugcgcgucaGGCAGGUGGgcaagcuggUGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCG---------UCGUCCACU---------GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 128778 0.66 0.984946
Target:  5'- aGUGUGGc--CAGCAGG-GcCGAAGCg -3'
miRNA:   3'- cCACGUCaacGUCGUCCaCuGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 41484 0.66 0.984946
Target:  5'- cGUGCAGaUGCGGgAGuuuGUGGucUGggGCa -3'
miRNA:   3'- cCACGUCaACGUCgUC---CACU--GCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 98408 0.66 0.984946
Target:  5'- --cGCAGgcgcUGCAGcCAGGcacGGgGAAGCg -3'
miRNA:   3'- ccaCGUCa---ACGUC-GUCCa--CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 149588 0.66 0.984946
Target:  5'- uGGa--AGggGCGGCGGGaGAgGAGGCu -3'
miRNA:   3'- -CCacgUCaaCGUCGUCCaCUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 153403 0.66 0.983071
Target:  5'- gGGUGCcaagggAGUUcccgGgGGCGGGUGugGcuGGCu -3'
miRNA:   3'- -CCACG------UCAA----CgUCGUCCACugCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 131583 0.66 0.982273
Target:  5'- uGGUGC--UUGUGGCGGGgacuacugugguaGugGggGCu -3'
miRNA:   3'- -CCACGucAACGUCGUCCa------------CugCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 38811 0.66 0.981024
Target:  5'- gGGUGCAcaucUGCAGcCAGGcccUGAgccUGggGCa -3'
miRNA:   3'- -CCACGUca--ACGUC-GUCC---ACU---GCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 91103 0.66 0.981024
Target:  5'- --gGCAGUgGCAGCggagggaggugaGGGUGcCGAGGg -3'
miRNA:   3'- ccaCGUCAaCGUCG------------UCCACuGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 88074 0.66 0.981024
Target:  5'- cGGUGCAGUUGCAcccGUGGucaugcuaucuuGUaACGggGUa -3'
miRNA:   3'- -CCACGUCAACGU---CGUC------------CAcUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 68174 0.66 0.978798
Target:  5'- cGG-GCAGgcGCAGCgucAGGacgcgGGCGcAGCg -3'
miRNA:   3'- -CCaCGUCaaCGUCG---UCCa----CUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 10986 0.66 0.978798
Target:  5'- --aGCAGgcgGCGcuGCcGGUGACGggGg -3'
miRNA:   3'- ccaCGUCaa-CGU--CGuCCACUGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 14030 0.66 0.978798
Target:  5'- aGG-GCAGggaGCAgGCGGGggcaGGCGcAAGCg -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGUCCa---CUGC-UUCG- -5'
28854 5' -52.5 NC_006146.1 + 132808 0.67 0.976384
Target:  5'- --aGCAGcUGCAgGCGGGgGAUGGguAGCa -3'
miRNA:   3'- ccaCGUCaACGU-CGUCCaCUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 50726 0.67 0.976384
Target:  5'- --gGC-GUUG-AGCGGGggcGACGggGCg -3'
miRNA:   3'- ccaCGuCAACgUCGUCCa--CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 39271 0.67 0.974579
Target:  5'- gGGUGUGGgccccggacucgagaCGGCAGGUGGCagcaGAGGCc -3'
miRNA:   3'- -CCACGUCaac------------GUCGUCCACUG----CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 112951 0.67 0.973775
Target:  5'- --cGUAGUgGCAGU-GGUGAUGcAGCa -3'
miRNA:   3'- ccaCGUCAaCGUCGuCCACUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 69356 0.67 0.96794
Target:  5'- aGGUGguGuUUGUGG-AGGUaGACGAgcuGGCa -3'
miRNA:   3'- -CCACguC-AACGUCgUCCA-CUGCU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.