miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28855 5' -52.6 NC_006146.1 + 170619 0.66 0.987003
Target:  5'- gCCCGCCcccGGGUCuuCCCGGGcUCCcccucacggGUGGCg -3'
miRNA:   3'- -GGGCGG---UCUAG--GGGUUCuAGG---------UAUUG- -5'
28855 5' -52.6 NC_006146.1 + 34612 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34519 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34426 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34333 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34240 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34147 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34054 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 33961 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34705 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34798 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34891 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35634 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35541 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35448 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35355 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35262 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35169 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 35076 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5'
28855 5' -52.6 NC_006146.1 + 34983 0.66 0.987003
Target:  5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3'
miRNA:   3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.