miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 68035 0.66 0.874469
Target:  5'- gCCCGGCCaCGaCCagGUGgCGGCUGCc -3'
miRNA:   3'- -GGGUUGGaGCgGGa-CAUgGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 17597 0.66 0.874469
Target:  5'- -gCGACCUgGCCCgggccugGUGCCuGgaGCa -3'
miRNA:   3'- ggGUUGGAgCGGGa------CAUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 129896 0.66 0.871595
Target:  5'- uUCGACCacgugucucucugCGCCCUGgggcGCCGGCgcgGCa -3'
miRNA:   3'- gGGUUGGa------------GCGGGACa---UGGUCGa--CGa -5'
28857 5' -57.6 NC_006146.1 + 92239 0.66 0.867222
Target:  5'- gCgGGCC-CGgCCUGUGgCuGCUGCUg -3'
miRNA:   3'- gGgUUGGaGCgGGACAUgGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 32760 0.66 0.867222
Target:  5'- aCCCAaaGCCcacaUUGCCCccauccaGCCGGCUGCc -3'
miRNA:   3'- -GGGU--UGG----AGCGGGaca----UGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 84405 0.66 0.867222
Target:  5'- gCCCAGCU--GCCCcucaaGgcCCAGCUGCc -3'
miRNA:   3'- -GGGUUGGagCGGGa----CauGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 33520 0.66 0.867222
Target:  5'- uCCCGGCCUCccuCCCuagguUGUGCCcGGCUuGCc -3'
miRNA:   3'- -GGGUUGGAGc--GGG-----ACAUGG-UCGA-CGa -5'
28857 5' -57.6 NC_006146.1 + 42900 0.66 0.867222
Target:  5'- gCCGACgCUaggGCCuCUGUcCCGGCUGUc -3'
miRNA:   3'- gGGUUG-GAg--CGG-GACAuGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 109083 0.66 0.859769
Target:  5'- aCCUucACCcCGCCCgugccGUGCCGGC-GCg -3'
miRNA:   3'- -GGGu-UGGaGCGGGa----CAUGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 39829 0.66 0.852117
Target:  5'- gCCCGgcgGCCUCGgCCgcacaGUggGCCGGCggggGCUg -3'
miRNA:   3'- -GGGU---UGGAGCgGGa----CA--UGGUCGa---CGA- -5'
28857 5' -57.6 NC_006146.1 + 86365 0.66 0.852117
Target:  5'- gCCCAACCaccugccacgGCgCCUGUACCGGCa--- -3'
miRNA:   3'- -GGGUUGGag--------CG-GGACAUGGUCGacga -5'
28857 5' -57.6 NC_006146.1 + 150707 0.66 0.844271
Target:  5'- gCCCAGCCUccugCGCCCccgGggGCCcuCUGCa -3'
miRNA:   3'- -GGGUUGGA----GCGGGa--Ca-UGGucGACGa -5'
28857 5' -57.6 NC_006146.1 + 139697 0.66 0.844271
Target:  5'- gCCAGgCUUGUgguuaaggucccUCUGUGCCAGCUGa- -3'
miRNA:   3'- gGGUUgGAGCG------------GGACAUGGUCGACga -5'
28857 5' -57.6 NC_006146.1 + 146716 0.66 0.844271
Target:  5'- gCCCAGCCcuccUCuGCCCUGU-CCAcgUGCa -3'
miRNA:   3'- -GGGUUGG----AG-CGGGACAuGGUcgACGa -5'
28857 5' -57.6 NC_006146.1 + 151771 0.66 0.844271
Target:  5'- gUCAGCCUUGCgCCUGc-CCAGUaGCUu -3'
miRNA:   3'- gGGUUGGAGCG-GGACauGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 22425 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 19347 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 28581 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 25503 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 13191 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.