miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 3' -60.6 NC_001493.1 + 89241 0.66 0.712724
Target:  5'- aCAGGGGGUgcgaccgagauggGAgCCCGaGCGuGgACCAGa -3'
miRNA:   3'- -GUCUCCCG-------------CUgGGGC-CGCuUgUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 62562 0.66 0.707855
Target:  5'- aCGGGGGGCGAgguccaCCgGGCGGucACaaacccaagaguggaGCCAGg -3'
miRNA:   3'- -GUCUCCCGCUg-----GGgCCGCU--UG---------------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 111506 0.66 0.703948
Target:  5'- ---cGGGUG-CCggaCCGGUGAGCGCCAu -3'
miRNA:   3'- gucuCCCGCuGG---GGCCGCUUGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 94697 0.66 0.703948
Target:  5'- -cGGGGGUacgUCCCGGUGggUGCCAc -3'
miRNA:   3'- guCUCCCGcu-GGGGCCGCuuGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 4708 0.66 0.694143
Target:  5'- cCGGGGGcGCGGCagCGGCGGGgguCACCGa -3'
miRNA:   3'- -GUCUCC-CGCUGggGCCGCUU---GUGGUc -5'
2886 3' -60.6 NC_001493.1 + 11149 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 62418 0.66 0.684288
Target:  5'- ---cGGGCGugucggguugaACCCuCGGCGAACGaucCCGGa -3'
miRNA:   3'- gucuCCCGC-----------UGGG-GCCGCUUGU---GGUC- -5'
2886 3' -60.6 NC_001493.1 + 126704 0.66 0.684288
Target:  5'- --cAGGGCucgauGACCCCcgaGGCGGACgaucugACCAGa -3'
miRNA:   3'- gucUCCCG-----CUGGGG---CCGCUUG------UGGUC- -5'
2886 3' -60.6 NC_001493.1 + 107227 0.66 0.684288
Target:  5'- aAGcGGGCG-CCCCGGCGGucgACCn- -3'
miRNA:   3'- gUCuCCCGCuGGGGCCGCUug-UGGuc -5'
2886 3' -60.6 NC_001493.1 + 87329 0.66 0.664463
Target:  5'- aGGAGGuGCacucggugccGAUCCCGGgGGugACCAu -3'
miRNA:   3'- gUCUCC-CG----------CUGGGGCCgCUugUGGUc -5'
2886 3' -60.6 NC_001493.1 + 65995 0.66 0.65451
Target:  5'- cCGGAGGGaguggGACaCCGGC-AGCAUCGGg -3'
miRNA:   3'- -GUCUCCCg----CUGgGGCCGcUUGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 47686 0.67 0.644539
Target:  5'- gGGuAGGGUGGCCCCGGaccCGAugAaaCAGg -3'
miRNA:   3'- gUC-UCCCGCUGGGGCC---GCUugUg-GUC- -5'
2886 3' -60.6 NC_001493.1 + 102158 0.67 0.644539
Target:  5'- gAGGGGgagccuucgguGCGACCCCuucgGGUGAagACGCCAc -3'
miRNA:   3'- gUCUCC-----------CGCUGGGG----CCGCU--UGUGGUc -5'
2886 3' -60.6 NC_001493.1 + 13253 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 39323 0.67 0.63456
Target:  5'- aGGGGGGCGACCaCGGaCGAcucgauCACgAGc -3'
miRNA:   3'- gUCUCCCGCUGGgGCC-GCUu-----GUGgUC- -5'
2886 3' -60.6 NC_001493.1 + 128807 0.67 0.63456
Target:  5'- aAGAGGGUGAUCUucgCGuGCGGGCACagaaAGa -3'
miRNA:   3'- gUCUCCCGCUGGG---GC-CGCUUGUGg---UC- -5'
2886 3' -60.6 NC_001493.1 + 56366 0.67 0.630567
Target:  5'- aCAGGGGGCGAUCCagaucggauacaaGGUGGgaaugauccGCACCu- -3'
miRNA:   3'- -GUCUCCCGCUGGGg------------CCGCU---------UGUGGuc -5'
2886 3' -60.6 NC_001493.1 + 19752 0.67 0.624578
Target:  5'- gCGGAGGGUacGCUCCcGCGG-CACCGGg -3'
miRNA:   3'- -GUCUCCCGc-UGGGGcCGCUuGUGGUC- -5'
2886 3' -60.6 NC_001493.1 + 58188 0.67 0.624578
Target:  5'- aAGGGGaCG-CUCCGGUGAugACCAc -3'
miRNA:   3'- gUCUCCcGCuGGGGCCGCUugUGGUc -5'
2886 3' -60.6 NC_001493.1 + 61944 0.67 0.624578
Target:  5'- gAGAGGuCGAaUCCGGCGGAUcCCGGa -3'
miRNA:   3'- gUCUCCcGCUgGGGCCGCUUGuGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.