Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28861 | 5' | -59.1 | NC_006146.1 | + | 42658 | 1.08 | 0.001633 |
Target: 5'- gUGGGCCCAGAGGUAGCGGAAGAGCUCc -3' miRNA: 3'- -ACCCGGGUCUCCAUCGCCUUCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 99147 | 0.8 | 0.15049 |
Target: 5'- gGGGCuCCAGcgaccggcAGGUGGCGGAGGgccAGCUCg -3' miRNA: 3'- aCCCG-GGUC--------UCCAUCGCCUUC---UCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 139077 | 0.78 | 0.197853 |
Target: 5'- cGGGCCCu--GGUGGCGcGggGGGCUg -3' miRNA: 3'- aCCCGGGucuCCAUCGC-CuuCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 148350 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 154506 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 156516 | 0.77 | 0.223402 |
Target: 5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3' miRNA: 3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 145272 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 151428 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 157584 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 142194 | 0.77 | 0.228837 |
Target: 5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3' miRNA: 3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 110390 | 0.76 | 0.251703 |
Target: 5'- uUGGGCCCAGuGGgAGCacccucgccgucGGggGAGCUg -3' miRNA: 3'- -ACCCGGGUCuCCaUCG------------CCuuCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 14910 | 0.75 | 0.303032 |
Target: 5'- gUGccCCCGGAGGUGGCGGAgcucucGGAGCUg -3' miRNA: 3'- -ACccGGGUCUCCAUCGCCU------UCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 32142 | 0.74 | 0.317062 |
Target: 5'- gGGGUgCuGGGGUGGgGGAuGGGCUCa -3' miRNA: 3'- aCCCGgGuCUCCAUCgCCUuCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 157858 | 0.74 | 0.35425 |
Target: 5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3' miRNA: 3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 142469 | 0.74 | 0.35425 |
Target: 5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3' miRNA: 3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 54874 | 0.74 | 0.331576 |
Target: 5'- cGGGCCgUGGAGGccuuaaccGGcCGGAGGAGCUCu -3' miRNA: 3'- aCCCGG-GUCUCCa-------UC-GCCUUCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 145547 | 0.74 | 0.35425 |
Target: 5'- gGGGCCCGGAGucu-CGGAGGAucGCUCa -3' miRNA: 3'- aCCCGGGUCUCcaucGCCUUCU--CGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 135972 | 0.74 | 0.317062 |
Target: 5'- gGGGUgCuGGGGUGGgGGAuGGGCUCa -3' miRNA: 3'- aCCCGgGuCUCCAUCgCCUuCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 161744 | 0.74 | 0.324258 |
Target: 5'- --aGCCCGGGGGUGGCGGcuGAGgUCc -3' miRNA: 3'- accCGGGUCUCCAUCGCCuuCUCgAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 57010 | 0.74 | 0.331576 |
Target: 5'- gGGGCCauggccgaggaGGAGGUGGCGGuGGAGUg- -3' miRNA: 3'- aCCCGGg----------UCUCCAUCGCCuUCUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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