miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 115163 0.66 0.983272
Target:  5'- gGGCGGUGGAGAUcuugGGCGuGuacGCGg -3'
miRNA:   3'- -UCGUCAUCUCUG----CCGCuCca-CGC- -5'
28863 3' -51.7 NC_006146.1 + 43628 0.66 0.983272
Target:  5'- aGGgAGU--GGGCGGCGGGGcGUGg -3'
miRNA:   3'- -UCgUCAucUCUGCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 54804 0.66 0.983272
Target:  5'- gGGCAGcucguUGGAGAggaccCGGCGgAGG-GCGg -3'
miRNA:   3'- -UCGUC-----AUCUCU-----GCCGC-UCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 166988 0.66 0.983272
Target:  5'- gGGCAGUGGcuGGGCG-CGguugaAGGUGCa -3'
miRNA:   3'- -UCGUCAUC--UCUGCcGC-----UCCACGc -5'
28863 3' -51.7 NC_006146.1 + 14031 0.66 0.981183
Target:  5'- gGGCAG-GGAG-CaGGCGGGGgcagGCGc -3'
miRNA:   3'- -UCGUCaUCUCuG-CCGCUCCa---CGC- -5'
28863 3' -51.7 NC_006146.1 + 162605 0.66 0.981183
Target:  5'- cAGCuGUaugcaagacucGGAGGCGGUGGGGguaacgGCa -3'
miRNA:   3'- -UCGuCA-----------UCUCUGCCGCUCCa-----CGc -5'
28863 3' -51.7 NC_006146.1 + 48005 0.66 0.981183
Target:  5'- uGGUGGcgGGAGGCuuGGCGGGGgagGCa -3'
miRNA:   3'- -UCGUCa-UCUCUG--CCGCUCCa--CGc -5'
28863 3' -51.7 NC_006146.1 + 6724 0.66 0.978906
Target:  5'- gGGUGGUGaAGACGGgGucuGGUGCu -3'
miRNA:   3'- -UCGUCAUcUCUGCCgCu--CCACGc -5'
28863 3' -51.7 NC_006146.1 + 51086 0.66 0.978906
Target:  5'- aGGCAGUGGGGAUGuuGAGGa--- -3'
miRNA:   3'- -UCGUCAUCUCUGCcgCUCCacgc -5'
28863 3' -51.7 NC_006146.1 + 100242 0.66 0.978906
Target:  5'- uGGCAGUGGGGGCGuucacgcaCGGGG-GCu -3'
miRNA:   3'- -UCGUCAUCUCUGCc-------GCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 169180 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 43277 0.66 0.97643
Target:  5'- gGGCGGccUGGAGGucCGGC-AGGUGCc -3'
miRNA:   3'- -UCGUC--AUCUCU--GCCGcUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 168248 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 167316 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 123088 0.66 0.97591
Target:  5'- uGGCAGcccgagcccauGAGACGGCGGuGG-GCGc -3'
miRNA:   3'- -UCGUCau---------CUCUGCCGCU-CCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 60477 0.66 0.975647
Target:  5'- gAGCGGUgagaggccGGGgggccagcucccccGACGGCGAgGGUGCu -3'
miRNA:   3'- -UCGUCA--------UCU--------------CUGCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 68743 0.67 0.970548
Target:  5'- gGGUGGUGGAGGCccaGGUGGccaagcuucaggcGGUGCGc -3'
miRNA:   3'- -UCGUCAUCUCUG---CCGCU-------------CCACGC- -5'
28863 3' -51.7 NC_006146.1 + 170111 0.67 0.96773
Target:  5'- cGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 167863 0.67 0.96773
Target:  5'- cGGC-GUAGGGGCacgGAGGUGCGg -3'
miRNA:   3'- -UCGuCAUCUCUGccgCUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 26991 0.67 0.964381
Target:  5'- cGGCAGgggcaacgaAGGGaACGGCGAGaGUGuCGa -3'
miRNA:   3'- -UCGUCa--------UCUC-UGCCGCUC-CAC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.