miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 5' -55.1 NC_006146.1 + 125861 0.66 0.93294
Target:  5'- uAGGGAGCCggccccggccuCUCuCCCUCACucUCGAGGg -3'
miRNA:   3'- -UCUCUCGG-----------GAG-GGGGGUGuuAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 116412 0.66 0.93294
Target:  5'- uGGGGAG-UCUCCUCCCACGAc----- -3'
miRNA:   3'- -UCUCUCgGGAGGGGGGUGUUaguuuu -5'
28873 5' -55.1 NC_006146.1 + 41327 0.66 0.93294
Target:  5'- gAGGGAGCUgUCCCUUCACcacCAGGGg -3'
miRNA:   3'- -UCUCUCGGgAGGGGGGUGuuaGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 31304 0.66 0.93294
Target:  5'- uGGAG-GCCUUcuccuccucgCCCCCCGCAGccUCAu-- -3'
miRNA:   3'- -UCUCuCGGGA----------GGGGGGUGUU--AGUuuu -5'
28873 5' -55.1 NC_006146.1 + 78740 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78620 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78680 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78888 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78650 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78770 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78590 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78710 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78800 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 78858 0.66 0.927685
Target:  5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3'
miRNA:   3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5'
28873 5' -55.1 NC_006146.1 + 48282 0.66 0.924413
Target:  5'- aAGAGGgccccggccuccuccGCCCcucgCCCUCCACcGUCGGAGg -3'
miRNA:   3'- -UCUCU---------------CGGGa---GGGGGGUGuUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 40540 0.66 0.922183
Target:  5'- gGGGGAGCUCUCagCCCCucugCACAGUgAAGc -3'
miRNA:   3'- -UCUCUCGGGAG--GGGG----GUGUUAgUUUu -5'
28873 5' -55.1 NC_006146.1 + 31031 0.66 0.922183
Target:  5'- cAGAGAcGUaaucccacaCCUCCCCCCAUGgcGUCAc-- -3'
miRNA:   3'- -UCUCU-CG---------GGAGGGGGGUGU--UAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 8287 0.66 0.916432
Target:  5'- uGGGAGCCC-CaCUCCCGgGGUCGc-- -3'
miRNA:   3'- uCUCUCGGGaG-GGGGGUgUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 155991 0.66 0.916432
Target:  5'- cGAGAGCuCCgccaCCUCCgggggCACGGUCGAGAa -3'
miRNA:   3'- uCUCUCG-GGa---GGGGG-----GUGUUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 47184 0.66 0.916432
Target:  5'- gGGAGAGCCCgccgCCgCCCCGagcgcCAGGc -3'
miRNA:   3'- -UCUCUCGGGa---GG-GGGGUguua-GUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.