Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28876 | 3' | -61.1 | NC_006146.1 | + | 22598 | 0.66 | 0.755315 |
Target: 5'- gUCUGGcucUCCGCGCUcCUGCUggagcuccuguUCUGGGu -3' miRNA: 3'- -AGACCc--AGGUGCGAaGGCGG-----------GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 42946 | 0.66 | 0.746137 |
Target: 5'- ---cGGUCCcUGCccUCCGCCCC-GGGc -3' miRNA: 3'- agacCCAGGuGCGa-AGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 47250 | 0.66 | 0.746137 |
Target: 5'- --cGGGUCgACGUg---GCCCCUGGc -3' miRNA: 3'- agaCCCAGgUGCGaaggCGGGGACCc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 46757 | 0.66 | 0.746137 |
Target: 5'- --aGGGUCCuCGCcucCCGaCCCC-GGGc -3' miRNA: 3'- agaCCCAGGuGCGaa-GGC-GGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 95061 | 0.66 | 0.736869 |
Target: 5'- gUUUGuGGUCCA-Gag-CUGCCCCUGGu -3' miRNA: 3'- -AGAC-CCAGGUgCgaaGGCGGGGACCc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 116472 | 0.66 | 0.735005 |
Target: 5'- gUCUGGG-CCACGUUcugaaagUCCaCCCCcaggccgcacaugUGGGc -3' miRNA: 3'- -AGACCCaGGUGCGA-------AGGcGGGG-------------ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 168460 | 0.66 | 0.727518 |
Target: 5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3' miRNA: 3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 3731 | 0.66 | 0.727518 |
Target: 5'- cUCUGGGggCCGCGUggCCcuucaGCCCg-GGGu -3' miRNA: 3'- -AGACCCa-GGUGCGaaGG-----CGGGgaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 124458 | 0.66 | 0.727518 |
Target: 5'- ---cGGcCUACGCcgCCGCCuuCCUGGGg -3' miRNA: 3'- agacCCaGGUGCGaaGGCGG--GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 47180 | 0.66 | 0.727518 |
Target: 5'- aCUGGGgagagCC-CGCcgCCGCCCCg--- -3' miRNA: 3'- aGACCCa----GGuGCGaaGGCGGGGaccc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 141304 | 0.66 | 0.727518 |
Target: 5'- --cGGGUucagCCugGCUga-GCCCCcGGGg -3' miRNA: 3'- agaCCCA----GGugCGAaggCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 170323 | 0.66 | 0.727518 |
Target: 5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3' miRNA: 3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 169392 | 0.66 | 0.727518 |
Target: 5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3' miRNA: 3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 167528 | 0.66 | 0.727518 |
Target: 5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3' miRNA: 3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 136811 | 0.66 | 0.718092 |
Target: 5'- gCUGGGU-CGCGg--CUGCCCCccGGGa -3' miRNA: 3'- aGACCCAgGUGCgaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 82835 | 0.66 | 0.718092 |
Target: 5'- gUCUGGGUUUuauauUGCgauugucCCGCCCCUGa- -3' miRNA: 3'- -AGACCCAGGu----GCGaa-----GGCGGGGACcc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 48235 | 0.66 | 0.714303 |
Target: 5'- cCUGGGUgagcgCCGCGCggagggcccccgCCGCCguCCUGGc -3' miRNA: 3'- aGACCCA-----GGUGCGaa----------GGCGG--GGACCc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 121150 | 0.66 | 0.7086 |
Target: 5'- gUCUGGG-CCugGgCcgCgCGCCCCUGa- -3' miRNA: 3'- -AGACCCaGGugC-GaaG-GCGGGGACcc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 99018 | 0.66 | 0.7086 |
Target: 5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3' miRNA: 3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 125608 | 0.66 | 0.7086 |
Target: 5'- cUCUGGGUCUugGuCUggcggGCCUCaGGGg -3' miRNA: 3'- -AGACCCAGGugC-GAagg--CGGGGaCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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