miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 22598 0.66 0.755315
Target:  5'- gUCUGGcucUCCGCGCUcCUGCUggagcuccuguUCUGGGu -3'
miRNA:   3'- -AGACCc--AGGUGCGAaGGCGG-----------GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 47250 0.66 0.746137
Target:  5'- --cGGGUCgACGUg---GCCCCUGGc -3'
miRNA:   3'- agaCCCAGgUGCGaaggCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 46757 0.66 0.746137
Target:  5'- --aGGGUCCuCGCcucCCGaCCCC-GGGc -3'
miRNA:   3'- agaCCCAGGuGCGaa-GGC-GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 42946 0.66 0.746137
Target:  5'- ---cGGUCCcUGCccUCCGCCCC-GGGc -3'
miRNA:   3'- agacCCAGGuGCGa-AGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 95061 0.66 0.736869
Target:  5'- gUUUGuGGUCCA-Gag-CUGCCCCUGGu -3'
miRNA:   3'- -AGAC-CCAGGUgCgaaGGCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 116472 0.66 0.735005
Target:  5'- gUCUGGG-CCACGUUcugaaagUCCaCCCCcaggccgcacaugUGGGc -3'
miRNA:   3'- -AGACCCaGGUGCGA-------AGGcGGGG-------------ACCC- -5'
28876 3' -61.1 NC_006146.1 + 170323 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 141304 0.66 0.727518
Target:  5'- --cGGGUucagCCugGCUga-GCCCCcGGGg -3'
miRNA:   3'- agaCCCA----GGugCGAaggCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 167528 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 47180 0.66 0.727518
Target:  5'- aCUGGGgagagCC-CGCcgCCGCCCCg--- -3'
miRNA:   3'- aGACCCa----GGuGCGaaGGCGGGGaccc -5'
28876 3' -61.1 NC_006146.1 + 3731 0.66 0.727518
Target:  5'- cUCUGGGggCCGCGUggCCcuucaGCCCg-GGGu -3'
miRNA:   3'- -AGACCCa-GGUGCGaaGG-----CGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 168460 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 124458 0.66 0.727518
Target:  5'- ---cGGcCUACGCcgCCGCCuuCCUGGGg -3'
miRNA:   3'- agacCCaGGUGCGaaGGCGG--GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 169392 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 82835 0.66 0.718092
Target:  5'- gUCUGGGUUUuauauUGCgauugucCCGCCCCUGa- -3'
miRNA:   3'- -AGACCCAGGu----GCGaa-----GGCGGGGACcc -5'
28876 3' -61.1 NC_006146.1 + 136811 0.66 0.718092
Target:  5'- gCUGGGU-CGCGg--CUGCCCCccGGGa -3'
miRNA:   3'- aGACCCAgGUGCgaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 48235 0.66 0.714303
Target:  5'- cCUGGGUgagcgCCGCGCggagggcccccgCCGCCguCCUGGc -3'
miRNA:   3'- aGACCCA-----GGUGCGaa----------GGCGG--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 99018 0.66 0.7086
Target:  5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3'
miRNA:   3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 125608 0.66 0.7086
Target:  5'- cUCUGGGUCUugGuCUggcggGCCUCaGGGg -3'
miRNA:   3'- -AGACCCAGGugC-GAagg--CGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 161881 0.66 0.7086
Target:  5'- cCUGGGagacCCG-GCUUCCcuuuugggcaacGCCCCgUGGGa -3'
miRNA:   3'- aGACCCa---GGUgCGAAGG------------CGGGG-ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.