miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 58386 0.66 0.769464
Target:  5'- uGACCCAgGCCCUccaccgGCCCC-UG-GACCg- -3'
miRNA:   3'- -CUGGGU-CGGGA------CGGGGcACuUUGGau -5'
28883 3' -59.6 NC_006146.1 + 60067 0.66 0.769464
Target:  5'- gGGCgCC-GCCUcGUCCCGUGGAGCUa- -3'
miRNA:   3'- -CUG-GGuCGGGaCGGGGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 41241 0.66 0.760144
Target:  5'- --aCCGGCCCUGCUCUGguacAGACCc- -3'
miRNA:   3'- cugGGUCGGGACGGGGCac--UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 68033 0.66 0.754499
Target:  5'- gGGCCCGGCCacgaccagguggcggCUGCCCUG-GcuGCCa- -3'
miRNA:   3'- -CUGGGUCGG---------------GACGGGGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 52129 0.66 0.750715
Target:  5'- gGACaCCAGCUCggGCCCCaccagGUcGAAGCCg- -3'
miRNA:   3'- -CUG-GGUCGGGa-CGGGG-----CA-CUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 66697 0.66 0.741184
Target:  5'- aACCCucGGCUUgcgGCCCCGUGggGgCg- -3'
miRNA:   3'- cUGGG--UCGGGa--CGGGGCACuuUgGau -5'
28883 3' -59.6 NC_006146.1 + 101656 0.66 0.741184
Target:  5'- gGACCCGGaCCUgGCCCUGggggGAAACg-- -3'
miRNA:   3'- -CUGGGUC-GGGaCGGGGCa---CUUUGgau -5'
28883 3' -59.6 NC_006146.1 + 71349 0.66 0.741184
Target:  5'- gGACCCcgauCUCUGCCCCG-GggGCUc- -3'
miRNA:   3'- -CUGGGuc--GGGACGGGGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 72574 0.66 0.741184
Target:  5'- cGGgCCGcGCCCgGCCCCGUGccagacGGCCa- -3'
miRNA:   3'- -CUgGGU-CGGGaCGGGGCACu-----UUGGau -5'
28883 3' -59.6 NC_006146.1 + 114692 0.66 0.741184
Target:  5'- aGACCCAgGCCCUGCacguucugcguUCCGUGcguggauGCCa- -3'
miRNA:   3'- -CUGGGU-CGGGACG-----------GGGCACuu-----UGGau -5'
28883 3' -59.6 NC_006146.1 + 78234 0.66 0.731561
Target:  5'- aACgCAGCCCacUGCCCCGUccaauGGCCa- -3'
miRNA:   3'- cUGgGUCGGG--ACGGGGCAcu---UUGGau -5'
28883 3' -59.6 NC_006146.1 + 53182 0.66 0.731561
Target:  5'- aGGCUCGGCCUcgGCCCCGgccuuggGggGCg-- -3'
miRNA:   3'- -CUGGGUCGGGa-CGGGGCa------CuuUGgau -5'
28883 3' -59.6 NC_006146.1 + 143052 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 146130 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 149208 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 152286 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 155364 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 158443 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 161002 0.66 0.731561
Target:  5'- uGACCuCAGCCCcaUGCCgUGUGcaugcguACCUGa -3'
miRNA:   3'- -CUGG-GUCGGG--ACGGgGCACuu-----UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 33377 0.66 0.730594
Target:  5'- cGCCgGGCCgCUGCCCCGcuccgggUGGGggguggcccGCCUGg -3'
miRNA:   3'- cUGGgUCGG-GACGGGGC-------ACUU---------UGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.