miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 127690 0.66 0.927754
Target:  5'- -cCUcuCACCAGCAGC-GCCcCAUCc -3'
miRNA:   3'- caGAucGUGGUCGUCGuCGGuGUAGu -5'
28886 3' -55.1 NC_006146.1 + 98326 0.66 0.927754
Target:  5'- cGUCUGGCACgGgGCcgggcGCGGCC-CGUCc -3'
miRNA:   3'- -CAGAUCGUGgU-CGu----CGUCGGuGUAGu -5'
28886 3' -55.1 NC_006146.1 + 48509 0.66 0.927754
Target:  5'- gGUCUccAGCACCuccGCguuccuGGCcGCCGCAUCc -3'
miRNA:   3'- -CAGA--UCGUGGu--CG------UCGuCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 107045 0.66 0.927213
Target:  5'- -aCUGGCACCacguguggcgaguGGCuAGCAGCCAgGa-- -3'
miRNA:   3'- caGAUCGUGG-------------UCG-UCGUCGGUgUagu -5'
28886 3' -55.1 NC_006146.1 + 17412 0.66 0.92223
Target:  5'- ---aAGCA-CGGCAGCGGCCAuugugcgcCGUCGa -3'
miRNA:   3'- cagaUCGUgGUCGUCGUCGGU--------GUAGU- -5'
28886 3' -55.1 NC_006146.1 + 17464 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 96027 0.66 0.916456
Target:  5'- aUCUGuGcCACCGGCAuGguGCCGgcCGUCAa -3'
miRNA:   3'- cAGAU-C-GUGGUCGU-CguCGGU--GUAGU- -5'
28886 3' -55.1 NC_006146.1 + 14386 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 23620 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 20542 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 26698 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 149649 0.66 0.910434
Target:  5'- gGUCgagcacGCGCCGGCAGCGcGCCuGCAc-- -3'
miRNA:   3'- -CAGau----CGUGGUCGUCGU-CGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 43283 0.66 0.910434
Target:  5'- -cCUGGagguCCGGCAGguGCCuaGCGUCc -3'
miRNA:   3'- caGAUCgu--GGUCGUCguCGG--UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 146834 0.66 0.906702
Target:  5'- ----cGCGCCAGCguagAGCccgggccuggcucggGGCCGCGUCAc -3'
miRNA:   3'- cagauCGUGGUCG----UCG---------------UCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 58367 0.66 0.897651
Target:  5'- cGUCUA-CACCAGCGccuGCAaauGCCACAggCAc -3'
miRNA:   3'- -CAGAUcGUGGUCGU---CGU---CGGUGUa-GU- -5'
28886 3' -55.1 NC_006146.1 + 54027 0.66 0.897651
Target:  5'- --gUGGCGCCuccGGagGGCGGCCAUGUCGg -3'
miRNA:   3'- cagAUCGUGG---UCg-UCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 46778 0.66 0.897651
Target:  5'- ----cGCGCCAccGCA-CAGCCACGUCu -3'
miRNA:   3'- cagauCGUGGU--CGUcGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 69223 0.66 0.89565
Target:  5'- cUCUAGCGCCGcccGUAGCccguuuccccccagGGCCAgGUCc -3'
miRNA:   3'- cAGAUCGUGGU---CGUCG--------------UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 158093 0.67 0.890896
Target:  5'- ----cGCACCGGCAGCcGCCguccguACGUCc -3'
miRNA:   3'- cagauCGUGGUCGUCGuCGG------UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 56523 0.67 0.890896
Target:  5'- cGUCgccGGcCAUCAGCAGCuGaCGCGUCAc -3'
miRNA:   3'- -CAGa--UC-GUGGUCGUCGuCgGUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.