miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28889 5' -50.3 NC_006146.1 + 30673 0.66 0.994864
Target:  5'- cGUCAA-CGCuguccacCCAGGCCcuGUCCGAu -3'
miRNA:   3'- -UAGUUcGCGu------GGUCUGG--CAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 18837 0.66 0.994864
Target:  5'- -cCAAGUGCuuCCAGACC--CCGGg -3'
miRNA:   3'- uaGUUCGCGu-GGUCUGGcaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 19987 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 23065 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 26143 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 29221 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 98309 0.66 0.994017
Target:  5'- --aGGGCGUGCUccguGGCCGUCUGGc -3'
miRNA:   3'- uagUUCGCGUGGu---CUGGCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 90826 0.66 0.994017
Target:  5'- -cCAGGCGCugUgcugGGACCGcgUUCGAg -3'
miRNA:   3'- uaGUUCGCGugG----UCUGGC--AGGCU- -5'
28889 5' -50.3 NC_006146.1 + 54024 0.66 0.994017
Target:  5'- -gCAGGCacugcuGCGCCuGGCCGggCCGGa -3'
miRNA:   3'- uaGUUCG------CGUGGuCUGGCa-GGCU- -5'
28889 5' -50.3 NC_006146.1 + 16910 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 13832 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 152660 0.66 0.994017
Target:  5'- -cCAGGCuguccaugaGCucccCCAGGCCGUCCa- -3'
miRNA:   3'- uaGUUCG---------CGu---GGUCUGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 123922 0.66 0.993742
Target:  5'- -aCGGGCGCaauuccuggcggcgGCCGGGCCGg-CGAa -3'
miRNA:   3'- uaGUUCGCG--------------UGGUCUGGCagGCU- -5'
28889 5' -50.3 NC_006146.1 + 131086 0.66 0.993062
Target:  5'- --gAGGC-CGCCGGGCCGUCa-- -3'
miRNA:   3'- uagUUCGcGUGGUCUGGCAGgcu -5'
28889 5' -50.3 NC_006146.1 + 111762 0.66 0.991988
Target:  5'- cUgAGGCGgGCCAGcagaaACCGUCCc- -3'
miRNA:   3'- uAgUUCGCgUGGUC-----UGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 114571 0.66 0.990786
Target:  5'- aAUCuuGGUcaGCAUCAGGCUGUCCa- -3'
miRNA:   3'- -UAGu-UCG--CGUGGUCUGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 22949 0.66 0.990786
Target:  5'- cUCucGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGu-UCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 58426 0.66 0.989447
Target:  5'- --uGAGCGCGCCGGGgUggGUCUGGg -3'
miRNA:   3'- uagUUCGCGUGGUCUgG--CAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 62690 0.67 0.987961
Target:  5'- -cCAAGCGCG-CGGugCGUgCGGu -3'
miRNA:   3'- uaGUUCGCGUgGUCugGCAgGCU- -5'
28889 5' -50.3 NC_006146.1 + 126949 0.67 0.987961
Target:  5'- ---uGGCGCucuCCGGGCgCGUCUGGa -3'
miRNA:   3'- uaguUCGCGu--GGUCUG-GCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.