miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28891 3' -46.9 NC_006146.1 + 135953 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 30890 0.66 0.999854
Target:  5'- aGAACCugACCCccGCg--AUAGGAa -3'
miRNA:   3'- -UUUGGugUGGGuaUGagaUGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135210 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135303 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135396 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135489 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135582 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135675 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135767 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 151494 0.66 0.999854
Target:  5'- aAGAUCugGCACCCGUGCUugucCUGCAGc- -3'
miRNA:   3'- -UUUGG--UGUGGGUAUGA----GAUGUCcu -5'
28891 3' -46.9 NC_006146.1 + 95662 0.66 0.999854
Target:  5'- --cCCACGCCCGccucggucagGCUCUuugagauccuGCAGGGc -3'
miRNA:   3'- uuuGGUGUGGGUa---------UGAGA----------UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 135860 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136046 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136139 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136232 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136511 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136418 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136325 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136697 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5'
28891 3' -46.9 NC_006146.1 + 136604 0.66 0.999854
Target:  5'- --uCCGCugCCccGCUCcgGCGGGGg -3'
miRNA:   3'- uuuGGUGugGGuaUGAGa-UGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.