miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 67952 0.66 0.999896
Target:  5'- gGGCGGCUGcCCUcgGAGGGCGAc-- -3'
miRNA:   3'- aCUGUCGGCuGGAagCUUUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 128917 0.66 0.999896
Target:  5'- -cGCAGCUGugCgggUCGAGGcCGGGAa -3'
miRNA:   3'- acUGUCGGCugGa--AGCUUUuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 102735 0.66 0.999896
Target:  5'- cUGAC-GCUGcGCCUgccCGggGAgGAGGCa -3'
miRNA:   3'- -ACUGuCGGC-UGGAa--GCuuUUgCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 167591 0.66 0.999896
Target:  5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3'
miRNA:   3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 122107 0.66 0.999896
Target:  5'- aGGCGGagaCCGggGCCUUCGugaagcuGGugGAGACg -3'
miRNA:   3'- aCUGUC---GGC--UGGAAGCu------UUugCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 130107 0.66 0.999896
Target:  5'- uUGAC-GCCGGCUUUCucaGAAaccgcGugGAGACc -3'
miRNA:   3'- -ACUGuCGGCUGGAAG---CUU-----UugCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 170386 0.66 0.999896
Target:  5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3'
miRNA:   3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 158828 0.66 0.999896
Target:  5'- cGGCcggGGcCCGGCCcUCGcAAAGCGAGcACa -3'
miRNA:   3'- aCUG---UC-GGCUGGaAGC-UUUUGCUU-UG- -5'
28894 3' -47.7 NC_006146.1 + 169455 0.66 0.999896
Target:  5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3'
miRNA:   3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 168523 0.66 0.999896
Target:  5'- gUGGaGGCCgGGCCUccccugggggccUCGggGGCGGAGg -3'
miRNA:   3'- -ACUgUCGG-CUGGA------------AGCuuUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 167156 0.66 0.999865
Target:  5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3'
miRNA:   3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 169020 0.66 0.999865
Target:  5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3'
miRNA:   3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 168088 0.66 0.999865
Target:  5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3'
miRNA:   3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 169952 0.66 0.999865
Target:  5'- gGGCAcuguGCCagGGCCUUCG-GGACGGGAg -3'
miRNA:   3'- aCUGU----CGG--CUGGAAGCuUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 50717 0.66 0.999865
Target:  5'- cUGAaAGCCGGCgUugagCGggGGCGAcggGGCg -3'
miRNA:   3'- -ACUgUCGGCUGgAa---GCuuUUGCU---UUG- -5'
28894 3' -47.7 NC_006146.1 + 103289 0.66 0.999865
Target:  5'- cUGGCcucGGCCGACCU-CGu--GCGcuACg -3'
miRNA:   3'- -ACUG---UCGGCUGGAaGCuuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 69280 0.66 0.999865
Target:  5'- cGGCGGCCGuuGCCaccgCGuaAAGACGAGGa -3'
miRNA:   3'- aCUGUCGGC--UGGaa--GC--UUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 168905 0.66 0.999858
Target:  5'- -cGCAGCgCGACUgucagcagguucUCGGAGACGAGGg -3'
miRNA:   3'- acUGUCG-GCUGGa-----------AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 129343 0.66 0.999854
Target:  5'- aGGCGGCCGAguggCUUCuaaagagagagccgGAGAGgGAAGCg -3'
miRNA:   3'- aCUGUCGGCUg---GAAG--------------CUUUUgCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 32016 0.66 0.999826
Target:  5'- gGACAGaggGGCC-UCG-GGACGAGGCg -3'
miRNA:   3'- aCUGUCgg-CUGGaAGCuUUUGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.