miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 5' -54.3 NC_006146.1 + 137071 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135399 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135492 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135585 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136142 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135770 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136049 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136235 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136792 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135306 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 137536 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136885 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136978 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136328 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135956 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135678 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136607 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135213 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136421 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136514 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.