miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 167706 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 156236 0.72 0.464782
Target:  5'- cCCCCUCgGCCguggaCGGGGUGCcGugGUUGg -3'
miRNA:   3'- aGGGGAGgUGG-----GUCUCGCG-CugCAAC- -5'
28899 3' -59.4 NC_006146.1 + 147190 0.73 0.412472
Target:  5'- gCCCCUUCGCCCGGuGCGCaGAgGa-- -3'
miRNA:   3'- aGGGGAGGUGGGUCuCGCG-CUgCaac -5'
28899 3' -59.4 NC_006146.1 + 144626 0.66 0.790164
Target:  5'- gCCCCUCCACCCAGGcuaauucCGCcaccCGUg- -3'
miRNA:   3'- aGGGGAGGUGGGUCUc------GCGcu--GCAac -5'
28899 3' -59.4 NC_006146.1 + 138772 0.67 0.772264
Target:  5'- aCCCCagCACCCcGGG-GUGACGUg- -3'
miRNA:   3'- aGGGGagGUGGGuCUCgCGCUGCAac -5'
28899 3' -59.4 NC_006146.1 + 137763 0.79 0.187184
Target:  5'- aCCCC-CCACCCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 137640 0.79 0.187184
Target:  5'- aCCCC-CCACCCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 137518 0.79 0.187184
Target:  5'- aCCCC-CCACCCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 129841 0.69 0.654387
Target:  5'- cUCCCUCCACCCcGAGgcccccagggccgcCGCgGACGggGg -3'
miRNA:   3'- aGGGGAGGUGGGuCUC--------------GCG-CUGCaaC- -5'
28899 3' -59.4 NC_006146.1 + 129768 0.66 0.790164
Target:  5'- gUCCCUCCAg--GGAGCGCGACu--- -3'
miRNA:   3'- aGGGGAGGUgggUCUCGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 128028 0.67 0.763134
Target:  5'- cCCCCUUCGCCUcccaccaguGGAaccuGCGCGugGg-- -3'
miRNA:   3'- aGGGGAGGUGGG---------UCU----CGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 126786 0.71 0.492201
Target:  5'- cCCCCUCCucgccgggcAgCCGGGGCcuggagguuuccGCGGCGUUGg -3'
miRNA:   3'- aGGGGAGG---------UgGGUCUCG------------CGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 126404 0.68 0.716019
Target:  5'- aCCCCggaCGCCCGGGGuCGCGAg---- -3'
miRNA:   3'- aGGGGag-GUGGGUCUC-GCGCUgcaac -5'
28899 3' -59.4 NC_006146.1 + 126224 0.7 0.597988
Target:  5'- cUCCUCUCCggGCCCGGAGUcacugccggGCGAgGUg- -3'
miRNA:   3'- -AGGGGAGG--UGGGUCUCG---------CGCUgCAac -5'
28899 3' -59.4 NC_006146.1 + 124393 0.69 0.637561
Target:  5'- --gCCUCCGCCCAGAGUGCcucCGg-- -3'
miRNA:   3'- aggGGAGGUGGGUCUCGCGcu-GCaac -5'
28899 3' -59.4 NC_006146.1 + 123868 0.7 0.549091
Target:  5'- gCCCCUUcucgCACCCAGGGCGCccGCGa-- -3'
miRNA:   3'- aGGGGAG----GUGGGUCUCGCGc-UGCaac -5'
28899 3' -59.4 NC_006146.1 + 119336 0.67 0.743617
Target:  5'- gCCCCUCCcggcggcGCCCAGGGUcaucacguacgGCGGCu--- -3'
miRNA:   3'- aGGGGAGG-------UGGGUCUCG-----------CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 119078 0.67 0.772264
Target:  5'- cCCCCUCCAcgccgcCCCGGGGaaCGgGugGcUUGg -3'
miRNA:   3'- aGGGGAGGU------GGGUCUC--GCgCugC-AAC- -5'
28899 3' -59.4 NC_006146.1 + 118455 0.66 0.790164
Target:  5'- gCCCCUCU--CCAGGGCGuCGACc--- -3'
miRNA:   3'- aGGGGAGGugGGUCUCGC-GCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 118204 0.7 0.56853
Target:  5'- cCCCCUgaccucCCGCCCGGAGCuggaCGAUGUccUGg -3'
miRNA:   3'- aGGGGA------GGUGGGUCUCGc---GCUGCA--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.