miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 3' -60.6 NC_006146.1 + 138755 0.66 0.699942
Target:  5'- gAGCGGCcUGC-CaCgGCCCUGGCUaaCCu -3'
miRNA:   3'- -UCGUCGuACGaGaGgUGGGACCGG--GG- -5'
28902 3' -60.6 NC_006146.1 + 137780 0.66 0.697003
Target:  5'- gGGCAGCGgcccgGCgaacccgccggcggCCACCCggcuGCCCCa -3'
miRNA:   3'- -UCGUCGUa----CGaga-----------GGUGGGac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 137657 0.66 0.697003
Target:  5'- gGGCAGCGgcccgGCggacccgccggcggCCACCCggcuGCCCCg -3'
miRNA:   3'- -UCGUCGUa----CGaga-----------GGUGGGac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 137535 0.66 0.697003
Target:  5'- gGGCAGCGgcccgGCggacccaccggcggCCACCCggcuGCCCCg -3'
miRNA:   3'- -UCGUCGUa----CGaga-----------GGUGGGac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 136818 0.66 0.690129
Target:  5'- cGCGGC-UGCcCcCCGggacCCCcGGCCCCg -3'
miRNA:   3'- uCGUCGuACGaGaGGU----GGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 136702 0.72 0.357085
Target:  5'- gGGCGGCGcgaGgUC-CCugCCUGGCCCa -3'
miRNA:   3'- -UCGUCGUa--CgAGaGGugGGACCGGGg -5'
28902 3' -60.6 NC_006146.1 + 130737 0.71 0.434403
Target:  5'- aGGCGGCggGCUCUuccccggagaagacgCCGCCCUGuaCCg -3'
miRNA:   3'- -UCGUCGuaCGAGA---------------GGUGGGACcgGGg -5'
28902 3' -60.6 NC_006146.1 + 130302 0.72 0.388786
Target:  5'- cGGCGGCAUGCggagguUCggCCGCCCagGGCCa- -3'
miRNA:   3'- -UCGUCGUACG------AGa-GGUGGGa-CCGGgg -5'
28902 3' -60.6 NC_006146.1 + 129810 0.67 0.670376
Target:  5'- uGCAcGCcugGCUCcCCucgcuguCCCUGGCCUCc -3'
miRNA:   3'- uCGU-CGua-CGAGaGGu------GGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 129277 0.66 0.719396
Target:  5'- uGgGGC-UGgUCUgCGCCCgGGCCCa -3'
miRNA:   3'- uCgUCGuACgAGAgGUGGGaCCGGGg -5'
28902 3' -60.6 NC_006146.1 + 128237 0.66 0.7097
Target:  5'- cGCGGgGaGCUCUuccgCUACCuCUGGgCCCa -3'
miRNA:   3'- uCGUCgUaCGAGA----GGUGG-GACCgGGG- -5'
28902 3' -60.6 NC_006146.1 + 126130 0.7 0.466481
Target:  5'- -cCGGCcuggGUUCcCCGCCCgccgGGCCCCg -3'
miRNA:   3'- ucGUCGua--CGAGaGGUGGGa---CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 125345 0.74 0.292595
Target:  5'- cGGCGGaCGUGUcuucccUCcCCugCCUGGCCCUg -3'
miRNA:   3'- -UCGUC-GUACG------AGaGGugGGACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 124841 0.66 0.677306
Target:  5'- uGCAGCAgcuauggcacucgcUGCg-UCC-CCUggagGGCCCCg -3'
miRNA:   3'- uCGUCGU--------------ACGagAGGuGGGa---CCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 124170 0.67 0.640544
Target:  5'- uGGcCAGCGUGgC-CUCCGCCC--GCCUCg -3'
miRNA:   3'- -UC-GUCGUAC-GaGAGGUGGGacCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 123727 0.68 0.600712
Target:  5'- cGGCGGCggGCUCUCC-CCaguauGCCUCc -3'
miRNA:   3'- -UCGUCGuaCGAGAGGuGGgac--CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 121359 0.69 0.532084
Target:  5'- uGGcCGGCGUgGC-CUCCGCCCccagagGaGCCCCc -3'
miRNA:   3'- -UC-GUCGUA-CGaGAGGUGGGa-----C-CGGGG- -5'
28902 3' -60.6 NC_006146.1 + 120609 0.74 0.266992
Target:  5'- cGGCGGCGccUGacagaUCUCCugcGCCCcuUGGCCCCg -3'
miRNA:   3'- -UCGUCGU--ACg----AGAGG---UGGG--ACCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 119305 0.66 0.719396
Target:  5'- uGUGGUAcGCUggccccucuggCUCC-CCCgGGCCCCu -3'
miRNA:   3'- uCGUCGUaCGA-----------GAGGuGGGaCCGGGG- -5'
28902 3' -60.6 NC_006146.1 + 118267 0.66 0.7097
Target:  5'- gAGCc-CAUGUUCUCgGCCC-GGUCCa -3'
miRNA:   3'- -UCGucGUACGAGAGgUGGGaCCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.