miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28902 5' -56 NC_006146.1 + 60480 0.66 0.917321
Target:  5'- -cGGUGAgaggCCGGGgGGCCAGCucccccGACg -3'
miRNA:   3'- caCCACUg---GGUCCaCCGGUUGua----CUG- -5'
28902 5' -56 NC_006146.1 + 89110 0.66 0.917321
Target:  5'- -cGGcacUGcCCCAGGUGGCacccccggaGACcgGGCg -3'
miRNA:   3'- caCC---ACuGGGUCCACCGg--------UUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 149973 0.66 0.917321
Target:  5'- aGUGG-GGgCCAGGgccugcaGGUCGGCcgGACu -3'
miRNA:   3'- -CACCaCUgGGUCCa------CCGGUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 128755 0.66 0.913825
Target:  5'- -gGGUGuCCgAGGccuucuucuggagugUGGCCAGCAgGGCc -3'
miRNA:   3'- caCCACuGGgUCC---------------ACCGGUUGUaCUG- -5'
28902 5' -56 NC_006146.1 + 114807 0.66 0.911445
Target:  5'- cGUGGagGAgCU-GGUGGCCGACAccuacuUGGCc -3'
miRNA:   3'- -CACCa-CUgGGuCCACCGGUUGU------ACUG- -5'
28902 5' -56 NC_006146.1 + 84380 0.66 0.911445
Target:  5'- cGUGGa---CCGGGcGGCCAuCAUGGCc -3'
miRNA:   3'- -CACCacugGGUCCaCCGGUuGUACUG- -5'
28902 5' -56 NC_006146.1 + 135879 0.66 0.911445
Target:  5'- -aGGUcauGACCCGGGcgUGGCgAGCAucggucagcUGACc -3'
miRNA:   3'- caCCA---CUGGGUCC--ACCGgUUGU---------ACUG- -5'
28902 5' -56 NC_006146.1 + 32049 0.66 0.911445
Target:  5'- -aGGUcauGACCCGGGcgUGGCgAGCAucggucagcUGACc -3'
miRNA:   3'- caCCA---CUGGGUCC--ACCGgUUGU---------ACUG- -5'
28902 5' -56 NC_006146.1 + 58383 0.66 0.911445
Target:  5'- -aGGUGACCCAGGcccuccaccGGCCccug-GACc -3'
miRNA:   3'- caCCACUGGGUCCa--------CCGGuuguaCUG- -5'
28902 5' -56 NC_006146.1 + 128431 0.66 0.905331
Target:  5'- -gGGUGAUCCGGGccGCaGACcgGGCg -3'
miRNA:   3'- caCCACUGGGUCCacCGgUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 20119 0.66 0.89898
Target:  5'- -cGGUGGCCCggcaccugcuGGG-GGCCAAaaaggagGACg -3'
miRNA:   3'- caCCACUGGG----------UCCaCCGGUUgua----CUG- -5'
28902 5' -56 NC_006146.1 + 15414 0.66 0.89898
Target:  5'- -aGGUGGCCUcagAGG-GGCUGGCccGGCu -3'
miRNA:   3'- caCCACUGGG---UCCaCCGGUUGuaCUG- -5'
28902 5' -56 NC_006146.1 + 111125 0.66 0.892395
Target:  5'- -gGGUcGAcacccucaaccCCCAGGUGGCCgGGCGgcUGGCc -3'
miRNA:   3'- caCCA-CU-----------GGGUCCACCGG-UUGU--ACUG- -5'
28902 5' -56 NC_006146.1 + 55380 0.66 0.892395
Target:  5'- -cGGgacGCCCGGGgcaccgaGGCCAGCAUcacGGCg -3'
miRNA:   3'- caCCac-UGGGUCCa------CCGGUUGUA---CUG- -5'
28902 5' -56 NC_006146.1 + 112130 0.66 0.891724
Target:  5'- gGUGGUGGCCUcGGUG-CUGACAuuggagguagcguUGGCg -3'
miRNA:   3'- -CACCACUGGGuCCACcGGUUGU-------------ACUG- -5'
28902 5' -56 NC_006146.1 + 55063 0.66 0.885581
Target:  5'- -gGGUGGCCaugacGGUGGUCAGgAcgGACg -3'
miRNA:   3'- caCCACUGGgu---CCACCGGUUgUa-CUG- -5'
28902 5' -56 NC_006146.1 + 167884 0.66 0.885581
Target:  5'- -cGGUGAgguugcUCCAGGgauggaaaGGCCccAGCAUGACc -3'
miRNA:   3'- caCCACU------GGGUCCa-------CCGG--UUGUACUG- -5'
28902 5' -56 NC_006146.1 + 28099 0.66 0.885581
Target:  5'- ----aGGCCCGGGUGgggaauGCUAACAUGAa -3'
miRNA:   3'- caccaCUGGGUCCAC------CGGUUGUACUg -5'
28902 5' -56 NC_006146.1 + 40652 0.66 0.884887
Target:  5'- aUGGUGGCCCGguuccuggagacuGGUGGUgGGCucUGAg -3'
miRNA:   3'- cACCACUGGGU-------------CCACCGgUUGu-ACUg -5'
28902 5' -56 NC_006146.1 + 44562 0.66 0.882792
Target:  5'- -cGG-GGCuCCGGGUGGCUGGCGgaaaugccaggagGACg -3'
miRNA:   3'- caCCaCUG-GGUCCACCGGUUGUa------------CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.