miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 58951 0.65 0.999959
Target:  5'- uGCGCuGAGGuGCugcagcccucgagGGAGACGGUGGc -3'
miRNA:   3'- gUGCG-UUCC-CGuuua---------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 115547 0.66 0.999949
Target:  5'- gCGCGCGGuGGCGGGggcUGGAGGCGAc-- -3'
miRNA:   3'- -GUGCGUUcCCGUUU---ACUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 170517 0.66 0.999949
Target:  5'- gCGCGCGGcGGGCGGGgccugaGggGGCGcgGc -3'
miRNA:   3'- -GUGCGUU-CCCGUUUa-----CuuCUGUuaCc -5'
28903 5' -47 NC_006146.1 + 71789 0.66 0.999949
Target:  5'- gGCGUuAGGGCuuGUGGcuccCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGuuUACUucu-GUUACC- -5'
28903 5' -47 NC_006146.1 + 19758 0.66 0.999949
Target:  5'- gACGCu-GGGCAccugcGAAGACAuagagGGg -3'
miRNA:   3'- gUGCGuuCCCGUuua--CUUCUGUua---CC- -5'
28903 5' -47 NC_006146.1 + 165382 0.66 0.999949
Target:  5'- gGCGcCAGGGGUcAGUGcgauGACuAUGGa -3'
miRNA:   3'- gUGC-GUUCCCGuUUACuu--CUGuUACC- -5'
28903 5' -47 NC_006146.1 + 100257 0.66 0.999948
Target:  5'- uCACGCAcgGGGGCuccAUGGAGccuccuaGCGggGGc -3'
miRNA:   3'- -GUGCGU--UCCCGuu-UACUUC-------UGUuaCC- -5'
28903 5' -47 NC_006146.1 + 40410 0.66 0.999946
Target:  5'- -cCGCGGGGGCAAAguagccacccggGgcGGCAGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUa-----------CuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 25168 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 22090 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 19012 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 15935 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAGgcuGGGugGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUUac-UUCugUuACC- -5'
28903 5' -47 NC_006146.1 + 116797 0.66 0.999932
Target:  5'- gACGCucAAGGGCGuggugGAGGGCGuccaGGa -3'
miRNA:   3'- gUGCG--UUCCCGUuua--CUUCUGUua--CC- -5'
28903 5' -47 NC_006146.1 + 28246 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 150462 0.66 0.999932
Target:  5'- --gGaCAGGGGCug--GAuGACAGUGGc -3'
miRNA:   3'- gugC-GUUCCCGuuuaCUuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 116286 0.66 0.999932
Target:  5'- aCGCGCAccgcacGGGUGAAUGuGGGGCAGgucaGGa -3'
miRNA:   3'- -GUGCGUu-----CCCGUUUAC-UUCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 20318 0.66 0.999932
Target:  5'- -cUGCA--GGCGGGUGcuGGACGAUGGc -3'
miRNA:   3'- guGCGUucCCGUUUACu-UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 156513 0.66 0.999932
Target:  5'- gUACGCGgcccggAGGGgAGcgGGAGGCGAgaucccgGGa -3'
miRNA:   3'- -GUGCGU------UCCCgUUuaCUUCUGUUa------CC- -5'
28903 5' -47 NC_006146.1 + 101536 0.66 0.999927
Target:  5'- uGCGCcAGGGCAcugacuacguccccAucuccGAGACGGUGGa -3'
miRNA:   3'- gUGCGuUCCCGU--------------Uuac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 96670 0.66 0.99992
Target:  5'- cCGCGC-AGGGCc--UGAAGAagaaggucuccagcaCGGUGGu -3'
miRNA:   3'- -GUGCGuUCCCGuuuACUUCU---------------GUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.