miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 87961 0.66 0.694195
Target:  5'- gGAGCcggaucuaCCCCGGGACcugCCCc--CCGGGg -3'
miRNA:   3'- -CUCGc-------GGGGCUCUGa--GGGcuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 16998 0.66 0.694195
Target:  5'- aGGCGUCUgGGGACUCUCGGGCauGa -3'
miRNA:   3'- cUCGCGGGgCUCUGAGGGCUUGgcCc -5'
2891 5' -61.4 NC_001493.1 + 132552 0.66 0.694195
Target:  5'- aGGCGUCUgGGGACUCUCGGGCauGa -3'
miRNA:   3'- cUCGCGGGgCUCUGAGGGCUUGgcCc -5'
2891 5' -61.4 NC_001493.1 + 14958 0.66 0.691287
Target:  5'- uAGCGCuCCCGcuccGCUCCUGGACgaccucgucgagcuCGGGg -3'
miRNA:   3'- cUCGCG-GGGCuc--UGAGGGCUUG--------------GCCC- -5'
2891 5' -61.4 NC_001493.1 + 27755 0.66 0.688375
Target:  5'- cGGGUcCCCuCGAGGCgUCCGGuuacguuacuggaacGCCGGGg -3'
miRNA:   3'- -CUCGcGGG-GCUCUGaGGGCU---------------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 72445 0.66 0.684487
Target:  5'- uGAGCGauaaCCCCGGGcugcgaUCCCGggUCaGGa -3'
miRNA:   3'- -CUCGC----GGGGCUCug----AGGGCuuGGcCC- -5'
2891 5' -61.4 NC_001493.1 + 55123 0.66 0.684487
Target:  5'- cGGGCGCCUCGuGAaugucaauUUUCgGGACCGcGGg -3'
miRNA:   3'- -CUCGCGGGGCuCU--------GAGGgCUUGGC-CC- -5'
2891 5' -61.4 NC_001493.1 + 101091 0.66 0.674739
Target:  5'- uGGUGCaCCCacuAGACUCCCGGA-CGGu -3'
miRNA:   3'- cUCGCG-GGGc--UCUGAGGGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 15698 0.66 0.664959
Target:  5'- uGAGCGCaUCGAGAC-CCU---CCGGGg -3'
miRNA:   3'- -CUCGCGgGGCUCUGaGGGcuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 113973 0.66 0.659079
Target:  5'- -cGCGgacgauacccUCCCGAGauGCUCCCGGGCCaugugcgccgcgaauGGGg -3'
miRNA:   3'- cuCGC----------GGGGCUC--UGAGGGCUUGG---------------CCC- -5'
2891 5' -61.4 NC_001493.1 + 43850 0.66 0.649264
Target:  5'- cGAGC-UCCCGAgugaagggauuucugGACUCCUGGGCCGcGa -3'
miRNA:   3'- -CUCGcGGGGCU---------------CUGAGGGCUUGGC-Cc -5'
2891 5' -61.4 NC_001493.1 + 126688 0.66 0.646316
Target:  5'- cGAGgGCuCCCGGGACcagggcucgaugaccCCCGAGgCGGa -3'
miRNA:   3'- -CUCgCG-GGGCUCUGa--------------GGGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 11133 0.66 0.646316
Target:  5'- cGAGgGCuCCCGGGACcagggcucgaugaccCCCGAGgCGGa -3'
miRNA:   3'- -CUCgCG-GGGCUCUGa--------------GGGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 129713 0.66 0.645334
Target:  5'- -cGCGCCCCGGGugacgacCUCgUGAcCCGGc -3'
miRNA:   3'- cuCGCGGGGCUCu------GAGgGCUuGGCCc -5'
2891 5' -61.4 NC_001493.1 + 16702 0.66 0.644351
Target:  5'- cGGGCcucucGCCCUGGGGCacccUCaCCGGuccucucACCGGGg -3'
miRNA:   3'- -CUCG-----CGGGGCUCUG----AG-GGCU-------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 115808 0.67 0.635503
Target:  5'- aGGGCGUaaCCCGAaag-UUCGAACCGGGa -3'
miRNA:   3'- -CUCGCG--GGGCUcugaGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 254 0.67 0.635503
Target:  5'- aGGGCGUaaCCCGAaag-UUCGAACCGGGa -3'
miRNA:   3'- -CUCGCG--GGGCUcugaGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 112863 0.67 0.633536
Target:  5'- cGAGaaGCCCCGGGAUcgCCCGuuccuccaggccAUCGGGg -3'
miRNA:   3'- -CUCg-CGGGGCUCUGa-GGGCu-----------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 134116 0.67 0.625669
Target:  5'- aGGGCucGCCCCGuGGC-CgUGGACgGGGg -3'
miRNA:   3'- -CUCG--CGGGGCuCUGaGgGCUUGgCCC- -5'
2891 5' -61.4 NC_001493.1 + 18561 0.67 0.625669
Target:  5'- aGGGCucGCCCCGuGGC-CgUGGACgGGGg -3'
miRNA:   3'- -CUCG--CGGGGCuCUGaGgGCUUGgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.