miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 5' -57.7 NC_006146.1 + 112968 0.66 0.867016
Target:  5'- uGCAG-CACCaUGGCGGCgCCGGc---- -3'
miRNA:   3'- -CGUUgGUGG-ACCGCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 115650 0.66 0.867016
Target:  5'- gGCcGCCACCcgGGCGGgggUCaUGGUGGAg -3'
miRNA:   3'- -CGuUGGUGGa-CCGCCg--AG-GCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 100248 0.66 0.859526
Target:  5'- ---cCCGCUggcggggugUGaGCGGCUCUGGUGGGg -3'
miRNA:   3'- cguuGGUGG---------AC-CGCCGAGGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 5611 0.66 0.859526
Target:  5'- gGCcGCCACCUGGCa-CUCCuGuGUGAc- -3'
miRNA:   3'- -CGuUGGUGGACCGccGAGG-C-CACUua -5'
28916 5' -57.7 NC_006146.1 + 157846 0.66 0.851835
Target:  5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3'
miRNA:   3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 142457 0.66 0.851835
Target:  5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3'
miRNA:   3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 145535 0.66 0.851835
Target:  5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3'
miRNA:   3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 148613 0.66 0.851835
Target:  5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3'
miRNA:   3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 154768 0.66 0.851835
Target:  5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3'
miRNA:   3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 28415 0.66 0.827617
Target:  5'- -gAACCAaggaGGCGGCUCCGGg---- -3'
miRNA:   3'- cgUUGGUgga-CCGCCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 140507 0.67 0.819187
Target:  5'- uGC-GCCACCUGGCGGC-CCu------ -3'
miRNA:   3'- -CGuUGGUGGACCGCCGaGGccacuua -5'
28916 5' -57.7 NC_006146.1 + 137681 0.67 0.819187
Target:  5'- gGCGGCCACCcGGCuGCcCCGGa---- -3'
miRNA:   3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 137559 0.67 0.819187
Target:  5'- gGCGGCCACCcGGCuGCcCCGGa---- -3'
miRNA:   3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 26165 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 13854 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 29243 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 23087 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 20009 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 16932 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 142864 0.67 0.819187
Target:  5'- uGCAGCCACCUGcc--CUCCGGcUGggUc -3'
miRNA:   3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.