miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 170668 0.67 0.781921
Target:  5'- ---cGGC-GCgGGGGAGGCCAGGGg- -3'
miRNA:   3'- aggaCUGcCGgUUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 170402 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 170344 0.68 0.735075
Target:  5'- cUCCUGGgaGGCCAcguguGGAGGCCcgcggaGAGGc- -3'
miRNA:   3'- -AGGACUg-CCGGUu----CCUCCGG------UUCCac -5'
28917 5' -58.4 NC_006146.1 + 170291 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 170171 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 170049 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 169471 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 169413 0.68 0.735075
Target:  5'- cUCCUGGgaGGCCAcguguGGAGGCCcgcggaGAGGc- -3'
miRNA:   3'- -AGGACUg-CCGGUu----CCUCCGG------UUCCac -5'
28917 5' -58.4 NC_006146.1 + 169360 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 169240 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 169117 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 168539 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 168491 0.69 0.646034
Target:  5'- gUCC--ACGGUCGGGG-GGCCGGGGa- -3'
miRNA:   3'- -AGGacUGCCGGUUCCuCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 168481 0.68 0.735075
Target:  5'- cUCCUGGgaGGCCAcguguGGAGGCCcgcggaGAGGc- -3'
miRNA:   3'- -AGGACUg-CCGGUu----CCUCCGG------UUCCac -5'
28917 5' -58.4 NC_006146.1 + 168428 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 168308 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 168185 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 167607 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 167549 0.68 0.735075
Target:  5'- cUCCUGGgaGGCCAcguguGGAGGCCcgcggaGAGGc- -3'
miRNA:   3'- -AGGACUg-CCGGUu----CCUCCGG------UUCCac -5'
28917 5' -58.4 NC_006146.1 + 167496 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.