miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 47031 0.66 0.982927
Target:  5'- cGCggGCGCC--CUGGguGCgagaagGGGCCGGu -3'
miRNA:   3'- -CGa-UGUGGauGACCguCGa-----CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 12856 0.66 0.982927
Target:  5'- --gGCGCCUggggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA--------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 128328 0.66 0.982927
Target:  5'- gGCUGguCCUGCUGGCccuGgaGAugaaGCCGa -3'
miRNA:   3'- -CGAUguGGAUGACCGu--CgaCU----UGGUc -5'
28918 3' -52.7 NC_006146.1 + 24357 0.66 0.980857
Target:  5'- aGCUACAagUAgUGGC-GCaGGGCCAGc -3'
miRNA:   3'- -CGAUGUggAUgACCGuCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 154664 0.66 0.980857
Target:  5'- gGCUGCACCgUGgUGGCGgggggcGCUGcuGCUGGg -3'
miRNA:   3'- -CGAUGUGG-AUgACCGU------CGACu-UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 28246 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 19012 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 22090 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 25168 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 24089 0.66 0.978604
Target:  5'- cGCggccuCGCCUgggacGCgggucgagGGCGGCUGGcACCGGg -3'
miRNA:   3'- -CGau---GUGGA-----UGa-------CCGUCGACU-UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 14314 0.66 0.978604
Target:  5'- aGCUggcGCACCUGCUGGagaacucacGCaGGGCCGu -3'
miRNA:   3'- -CGA---UGUGGAUGACCgu-------CGaCUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 18959 0.66 0.97765
Target:  5'- uGgUGCGCCaGCggccccuagagagGGCGGCaGGGCCGGa -3'
miRNA:   3'- -CgAUGUGGaUGa------------CCGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 165914 0.66 0.976161
Target:  5'- aGCUGaggACUgUGCUGGCAGuCUGAGuuAGg -3'
miRNA:   3'- -CGAUg--UGG-AUGACCGUC-GACUUggUC- -5'
28918 3' -52.7 NC_006146.1 + 11547 0.66 0.975906
Target:  5'- aGCUACGCCcccgccaUGCUggaGGCGGCgcacGAgacGCCGGc -3'
miRNA:   3'- -CGAUGUGG-------AUGA---CCGUCGa---CU---UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 64846 0.66 0.975906
Target:  5'- gGCUGCACCUucugccagGCUccaaguccggaugGGCGGCcacGGCCAGc -3'
miRNA:   3'- -CGAUGUGGA--------UGA-------------CCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 137579 0.66 0.97352
Target:  5'- cGCUGC-CCggucCUGG-AGCUcGGGCCGGg -3'
miRNA:   3'- -CGAUGuGGau--GACCgUCGA-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 15264 0.66 0.97352
Target:  5'- gGCUcaaccGgGCCaUGCa-GCGGCUGAACCGGa -3'
miRNA:   3'- -CGA-----UgUGG-AUGacCGUCGACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 102739 0.66 0.97352
Target:  5'- cGCUGCGCCUGCccgGGgAGgaGGcaGCCc- -3'
miRNA:   3'- -CGAUGUGGAUGa--CCgUCgaCU--UGGuc -5'
28918 3' -52.7 NC_006146.1 + 115055 0.66 0.972967
Target:  5'- aCUGCACCUcgguguuGCUGGUGGCcGGGugcccacCCAGg -3'
miRNA:   3'- cGAUGUGGA-------UGACCGUCGaCUU-------GGUC- -5'
28918 3' -52.7 NC_006146.1 + 128601 0.66 0.970673
Target:  5'- gGCUGUACUUuCUGGC-GCUGGGCUAc -3'
miRNA:   3'- -CGAUGUGGAuGACCGuCGACUUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.