miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 38675 0.66 0.973588
Target:  5'- --cGCUGCUuGAAAaauggcaaccGGCAGcuucucuuccgguuaAGCCUGCg -3'
miRNA:   3'- ccuCGACGAcCUUU----------UCGUC---------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 169354 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 170285 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 168422 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 167490 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 21916 0.66 0.97248
Target:  5'- aGGAGggGCggGGAAGcuGGCAGAGgCCa-- -3'
miRNA:   3'- -CCUCgaCGa-CCUUU--UCGUCUC-GGacg -5'
28919 5' -53.4 NC_006146.1 + 140112 0.66 0.972198
Target:  5'- cGGAGgUGgUGGAAGaggggguGGCGGAGgUggugGCg -3'
miRNA:   3'- -CCUCgACgACCUUU-------UCGUCUCgGa---CG- -5'
28919 5' -53.4 NC_006146.1 + 97369 0.66 0.972198
Target:  5'- gGGAGCUccggaGcCUGGccaugcaAAAAGUA-AGCCUGCg -3'
miRNA:   3'- -CCUCGA-----C-GACC-------UUUUCGUcUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 7665 0.66 0.970755
Target:  5'- cGGGGUUcCUGGA---GCAGcgcuacccugccuacGGCCUGCc -3'
miRNA:   3'- -CCUCGAcGACCUuuuCGUC---------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 46914 0.66 0.969563
Target:  5'- cGGAGaag--GGAGagGAGCAcgugcuGAGCCUGCu -3'
miRNA:   3'- -CCUCgacgaCCUU--UUCGU------CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 57578 0.66 0.969563
Target:  5'- aGGAGCUGaccuucGGGGCGGuuGCCUGUc -3'
miRNA:   3'- -CCUCGACgaccu-UUUCGUCu-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 71779 0.66 0.969563
Target:  5'- uGGGGCUGgUGGcgu--UAGGGCUUGUg -3'
miRNA:   3'- -CCUCGACgACCuuuucGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 65165 0.66 0.969563
Target:  5'- uGGAGCUcUUGGAGcucuugGGGCucuuGGAGCCcuagGCg -3'
miRNA:   3'- -CCUCGAcGACCUU------UUCG----UCUCGGa---CG- -5'
28919 5' -53.4 NC_006146.1 + 58107 0.66 0.969563
Target:  5'- uGGGGC-GCaacgGGAGGcAGgAGAGCgUGCc -3'
miRNA:   3'- -CCUCGaCGa---CCUUU-UCgUCUCGgACG- -5'
28919 5' -53.4 NC_006146.1 + 120802 0.66 0.969563
Target:  5'- cGGuccGCgugGCcGGAcAAGCGGGGCC-GCc -3'
miRNA:   3'- -CCu--CGa--CGaCCUuUUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 14009 0.66 0.969563
Target:  5'- cGGGCuggUGCUGGAA-GGCGGAGg--GCa -3'
miRNA:   3'- cCUCG---ACGACCUUuUCGUCUCggaCG- -5'
28919 5' -53.4 NC_006146.1 + 123362 0.66 0.969563
Target:  5'- gGGAGCU-CUGGcgcuGGCcgGGGGCCccGCa -3'
miRNA:   3'- -CCUCGAcGACCuuu-UCG--UCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 133491 0.66 0.969563
Target:  5'- cGGGGUgaaacagGgaGGGuucgcGGGGCuuGGGGCCUGCu -3'
miRNA:   3'- -CCUCGa------CgaCCU-----UUUCG--UCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 90045 0.66 0.969563
Target:  5'- uGGAGCaggagguggUGCUGGAgGGAGCcuaGGAGgCggUGCa -3'
miRNA:   3'- -CCUCG---------ACGACCU-UUUCG---UCUCgG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 60278 0.66 0.966432
Target:  5'- cGGGgaGCgGGAGuuuGCGGAG-CUGCu -3'
miRNA:   3'- cCUCgaCGaCCUUuu-CGUCUCgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.