miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 36240 0.66 0.920267
Target:  5'- gGAGGAgg--CaGGGCGGCUucuggAGAGCUg -3'
miRNA:   3'- -CUCCUauuaGaCCCGUCGG-----UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 86317 0.66 0.920267
Target:  5'- uAGGAggccCUGGGCAGggucuugaUCAGGGCCc -3'
miRNA:   3'- cUCCUauuaGACCCGUC--------GGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 54728 0.66 0.920267
Target:  5'- uGGGAUuugccuucUCUGaGCGGaCCAGGGCCGu -3'
miRNA:   3'- cUCCUAuu------AGACcCGUC-GGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 141874 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 144952 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 148030 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 151108 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 154186 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 157264 0.66 0.920267
Target:  5'- aGGGGAgaggcugCUGGGgA-CCAGGGCCu -3'
miRNA:   3'- -CUCCUauua---GACCCgUcGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 87206 0.66 0.914451
Target:  5'- aGAGGAggacagGuGGCGGCCGcAGCCAu -3'
miRNA:   3'- -CUCCUauuagaC-CCGUCGGUcUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 4853 0.66 0.914451
Target:  5'- gGAGGggAAUagGGGCaggGGCgGGGGCCAc -3'
miRNA:   3'- -CUCCuaUUAgaCCCG---UCGgUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 137917 0.66 0.914451
Target:  5'- cGGGGGUuccggGGGCAGCCGcGAcCCAg -3'
miRNA:   3'- -CUCCUAuuagaCCCGUCGGU-CUcGGU- -5'
28921 3' -55.5 NC_006146.1 + 90637 0.66 0.914451
Target:  5'- gGAGGGUGGUUUGGgaggcgccGCGGCgAGGGUg- -3'
miRNA:   3'- -CUCCUAUUAGACC--------CGUCGgUCUCGgu -5'
28921 3' -55.5 NC_006146.1 + 96952 0.66 0.90839
Target:  5'- --cGcgAGUCUGGGC-GCCAGGGUg- -3'
miRNA:   3'- cucCuaUUAGACCCGuCGGUCUCGgu -5'
28921 3' -55.5 NC_006146.1 + 82319 0.66 0.902087
Target:  5'- aGGGAUGAUCUuaGGUAGUUcaaAGAGCCc -3'
miRNA:   3'- cUCCUAUUAGAc-CCGUCGG---UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 106905 0.66 0.902087
Target:  5'- cGGGAUccUCUGGGacuggaAGCCAGcagaaccucAGCCGg -3'
miRNA:   3'- cUCCUAuuAGACCCg-----UCGGUC---------UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 156605 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 153527 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 150449 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 141215 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.