miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 157059 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 167197 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 169061 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 169993 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 168129 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 108921 0.66 0.6681
Target:  5'- aCCGagcaggugaCGUGGGccucaACGGCCCCCguGUc- -3'
miRNA:   3'- gGGUg--------GCACCC-----UGCCGGGGGguCAcg -5'
28925 3' -63.4 NC_006146.1 + 103539 0.66 0.6681
Target:  5'- cCCCGuacUCGUGGGAccCGGaCCCCgAGgauggGCu -3'
miRNA:   3'- -GGGU---GGCACCCU--GCCgGGGGgUCa----CG- -5'
28925 3' -63.4 NC_006146.1 + 118553 0.66 0.6681
Target:  5'- cCCCACUGccaaaaGGAC-GCCgCCCCGG-GCa -3'
miRNA:   3'- -GGGUGGCac----CCUGcCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 141670 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 144747 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 147825 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 150903 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 153981 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 49874 0.66 0.6681
Target:  5'- aUCACCGUcGGGAggcuggGGUCCUCCGGUa- -3'
miRNA:   3'- gGGUGGCA-CCCUg-----CCGGGGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 45522 0.66 0.658587
Target:  5'- gCCACgGUGGGGgccugGGCCUCCUuggGCu -3'
miRNA:   3'- gGGUGgCACCCUg----CCGGGGGGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 100967 0.66 0.658587
Target:  5'- gCCAgCGcGGGGCGGCUcaCCCUGGUc- -3'
miRNA:   3'- gGGUgGCaCCCUGCCGG--GGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 161450 0.66 0.658587
Target:  5'- aCCCAaggcgCGUGGGGCGGgUaggCUGGUGCg -3'
miRNA:   3'- -GGGUg----GCACCCUGCCgGgg-GGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 15777 0.66 0.658587
Target:  5'- -aCGCCGcgGGGACcuuGCCCCaCCAGaagGUg -3'
miRNA:   3'- ggGUGGCa-CCCUGc--CGGGG-GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 32927 0.66 0.658587
Target:  5'- cCCCGCCGgcccccGGGAggccCGGCCgcgauccuCCCCcGUGa -3'
miRNA:   3'- -GGGUGGCa-----CCCU----GCCGG--------GGGGuCACg -5'
28925 3' -63.4 NC_006146.1 + 120888 0.66 0.658587
Target:  5'- cCCCuuCUGcuucGGugGuGCCCCCCuucGUGCa -3'
miRNA:   3'- -GGGu-GGCac--CCugC-CGGGGGGu--CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.