miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 3' -51.4 NC_006146.1 + 101853 0.66 0.995163
Target:  5'- gGGCUgccgcaCCACgGGUGGcgGGgcgagGACGGUGGc -3'
miRNA:   3'- -CCGG------GGUGaCUACCa-CCa----UUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 4207 0.66 0.995163
Target:  5'- cGGCUUCAUgacGGUGGUGGUcACGGc-- -3'
miRNA:   3'- -CCGGGGUGa--CUACCACCAuUGUUacc -5'
28927 3' -51.4 NC_006146.1 + 119942 0.66 0.995163
Target:  5'- cGGCgCUGCUGccGGaGGUcuCGGUGGg -3'
miRNA:   3'- -CCGgGGUGACuaCCaCCAuuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 37640 0.66 0.99494
Target:  5'- aGGCCCCACUuauuUGGUguauugguguugagGGUAGgGGggcUGGg -3'
miRNA:   3'- -CCGGGGUGAcu--ACCA--------------CCAUUgUU---ACC- -5'
28927 3' -51.4 NC_006146.1 + 42821 0.66 0.994387
Target:  5'- cGGCCCCucccgcaccuGCaUGAggccGGUGGUcuuGCGggGGg -3'
miRNA:   3'- -CCGGGG----------UG-ACUa---CCACCAu--UGUuaCC- -5'
28927 3' -51.4 NC_006146.1 + 139129 0.66 0.994387
Target:  5'- uGGCUCCGaUGGcgcaGGUGGggGCAGUGu -3'
miRNA:   3'- -CCGGGGUgACUa---CCACCauUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 14620 0.66 0.994387
Target:  5'- uGCCCUGCUGGcgcUGcGUGGgggAGCucAUGGu -3'
miRNA:   3'- cCGGGGUGACU---AC-CACCa--UUGu-UACC- -5'
28927 3' -51.4 NC_006146.1 + 161644 0.66 0.993513
Target:  5'- uGGCCUUaguuuGCUG-UGGgcUGGgGACAGUGGu -3'
miRNA:   3'- -CCGGGG-----UGACuACC--ACCaUUGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 22404 0.66 0.993513
Target:  5'- uGGCCCCGg-GGUccaccGUGGUGACccaGGUGGc -3'
miRNA:   3'- -CCGGGGUgaCUAc----CACCAUUG---UUACC- -5'
28927 3' -51.4 NC_006146.1 + 6048 0.66 0.992534
Target:  5'- -aUCCaagcaACUGAcGGUGGUAACGGaGGa -3'
miRNA:   3'- ccGGGg----UGACUaCCACCAUUGUUaCC- -5'
28927 3' -51.4 NC_006146.1 + 68851 0.66 0.992534
Target:  5'- aGGCCCUGCUGGcaagcaGGcUGGcGACAGccUGGc -3'
miRNA:   3'- -CCGGGGUGACUa-----CC-ACCaUUGUU--ACC- -5'
28927 3' -51.4 NC_006146.1 + 44868 0.66 0.99144
Target:  5'- gGGuCCCCGCUGAgaagccccUGGgcucGCGAUGGu -3'
miRNA:   3'- -CC-GGGGUGACUacc-----ACCau--UGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 139790 0.67 0.990223
Target:  5'- cGGCCCuCGguggugUUGAUGGgGGUGG-AGUGGg -3'
miRNA:   3'- -CCGGG-GU------GACUACCaCCAUUgUUACC- -5'
28927 3' -51.4 NC_006146.1 + 90483 0.67 0.988874
Target:  5'- uGGauCCCCACUa--GGUGGUuACAggGGa -3'
miRNA:   3'- -CC--GGGGUGAcuaCCACCAuUGUuaCC- -5'
28927 3' -51.4 NC_006146.1 + 157525 0.67 0.988874
Target:  5'- uGGCCgCGCaGAccacGGUGGUcGCGGUGa -3'
miRNA:   3'- -CCGGgGUGaCUa---CCACCAuUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 154249 0.67 0.988874
Target:  5'- aGCCaggCCGCUGGUGGgccucaGGUuGACGGUGa -3'
miRNA:   3'- cCGG---GGUGACUACCa-----CCA-UUGUUACc -5'
28927 3' -51.4 NC_006146.1 + 71341 0.67 0.985747
Target:  5'- uGGCCuuuCCAcCUGcUGG-GGUGcCAGUGGg -3'
miRNA:   3'- -CCGG---GGU-GACuACCaCCAUuGUUACC- -5'
28927 3' -51.4 NC_006146.1 + 80307 0.67 0.985747
Target:  5'- cGGCCaCCAgaGGUcGUGGUuuGGCGAcUGGg -3'
miRNA:   3'- -CCGG-GGUgaCUAcCACCA--UUGUU-ACC- -5'
28927 3' -51.4 NC_006146.1 + 155212 0.67 0.983952
Target:  5'- uGGCCCCG-UGAUGaaGGUGuACAggcuGUGGg -3'
miRNA:   3'- -CCGGGGUgACUACcaCCAU-UGU----UACC- -5'
28927 3' -51.4 NC_006146.1 + 159419 0.68 0.981989
Target:  5'- cGGCCCCcgaguccgggugGCUGAUGGUcGaGGCGG-GGa -3'
miRNA:   3'- -CCGGGG------------UGACUACCAcCaUUGUUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.