miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 170343 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 169412 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 168480 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 33740 0.66 0.981187
Target:  5'- cCUCCgGUCCGGUgGguguGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGG-UAGGUUAgUu---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 167548 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 98552 0.66 0.973946
Target:  5'- -gCCAgCCGGUcCAGGGCCCAagcgAAGGc -3'
miRNA:   3'- gaGGUaGGUUA-GUUCCGGGUg---UUCCa -5'
28927 5' -52.8 NC_006146.1 + 148146 0.66 0.973946
Target:  5'- gCUUCGUgCUggUCAGGGCCC---GGGUc -3'
miRNA:   3'- -GAGGUA-GGuuAGUUCCGGGuguUCCA- -5'
28927 5' -52.8 NC_006146.1 + 8503 0.66 0.973946
Target:  5'- -aCCAUCCu-----GGCCCACcGGGg -3'
miRNA:   3'- gaGGUAGGuuaguuCCGGGUGuUCCa -5'
28927 5' -52.8 NC_006146.1 + 112680 0.66 0.973674
Target:  5'- cCUCCAUgucggucUCGAUCucgggucuGGCCCGCAgcAGGg -3'
miRNA:   3'- -GAGGUA-------GGUUAGuu------CCGGGUGU--UCCa -5'
28927 5' -52.8 NC_006146.1 + 74719 0.66 0.971134
Target:  5'- gCUCagggCCAga-AAGGCCCugGAGGg -3'
miRNA:   3'- -GAGgua-GGUuagUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 116224 0.67 0.969345
Target:  5'- gCUCCGUCCGcuugucggcgggauUCGGGGCCaGCugcuGGGUa -3'
miRNA:   3'- -GAGGUAGGUu-------------AGUUCCGGgUGu---UCCA- -5'
28927 5' -52.8 NC_006146.1 + 59201 0.67 0.968422
Target:  5'- gCUCCAUCCug-CAGGGCUCccccaccuacgacucCAGGGa -3'
miRNA:   3'- -GAGGUAGGuuaGUUCCGGGu--------------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 165662 0.67 0.96811
Target:  5'- gUCCGUgaccCCAcagcccCGAGGCCgGCAAGGa -3'
miRNA:   3'- gAGGUA----GGUua----GUUCCGGgUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 41046 0.67 0.96811
Target:  5'- -cCCGUCCg--CGGcGGCCCugGGGGc -3'
miRNA:   3'- gaGGUAGGuuaGUU-CCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 11001 0.67 0.96811
Target:  5'- -cCCAUCUucGAgggccccggccUCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- gaGGUAGG--UU-----------AGUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 108961 0.67 0.96811
Target:  5'- -aCCGUCCcGUggacCAGGGCCCugGAGc- -3'
miRNA:   3'- gaGGUAGGuUA----GUUCCGGGugUUCca -5'
28927 5' -52.8 NC_006146.1 + 84982 0.67 0.96811
Target:  5'- -gCCAUCC-----AGGCCC-CAGGGUa -3'
miRNA:   3'- gaGGUAGGuuaguUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 13410 0.67 0.96811
Target:  5'- cCUCag-CCAGgucugCAAGGCCCGCccGGUc -3'
miRNA:   3'- -GAGguaGGUUa----GUUCCGGGUGuuCCA- -5'
28927 5' -52.8 NC_006146.1 + 50265 0.67 0.964868
Target:  5'- aCUCuCGUCCuucGUCGGGGCCa--AGGGg -3'
miRNA:   3'- -GAG-GUAGGu--UAGUUCCGGgugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 108451 0.67 0.964531
Target:  5'- -cCCGUCCGuacCAAGGUCCACuagcccgGAGGc -3'
miRNA:   3'- gaGGUAGGUua-GUUCCGGGUG-------UUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.