miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 170393 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 170322 0.66 0.961874
Target:  5'- cCGGGCCGCGc--CCCCGGCc----- -3'
miRNA:   3'- uGCCCGGUGUuuuGGGGCUGuugucg -5'
28928 3' -54 NC_006146.1 + 169736 0.68 0.926603
Target:  5'- uCGGcGCgGgGGAGCCCCGG-GGCGGCc -3'
miRNA:   3'- uGCC-CGgUgUUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 169462 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 169391 0.66 0.961874
Target:  5'- cCGGGCCGCGc--CCCCGGCc----- -3'
miRNA:   3'- uGCCCGGUGUuuuGGGGCUGuugucg -5'
28928 3' -54 NC_006146.1 + 169179 0.68 0.909431
Target:  5'- -gGGGUCGCccGACUCCaGGCGgagACAGCa -3'
miRNA:   3'- ugCCCGGUGuuUUGGGG-CUGU---UGUCG- -5'
28928 3' -54 NC_006146.1 + 168804 0.68 0.926603
Target:  5'- uCGGcGCgGgGGAGCCCCGG-GGCGGCc -3'
miRNA:   3'- uGCC-CGgUgUUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 168530 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 168459 0.66 0.961874
Target:  5'- cCGGGCCGCGc--CCCCGGCc----- -3'
miRNA:   3'- uGCCCGGUGUuuuGGGGCUGuugucg -5'
28928 3' -54 NC_006146.1 + 168354 0.66 0.971356
Target:  5'- gUGGGCUgaaGAAccagguGCCCCGaguaggugucucGCAGCGGCg -3'
miRNA:   3'- uGCCCGGug-UUU------UGGGGC------------UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 167872 0.68 0.926603
Target:  5'- uCGGcGCgGgGGAGCCCCGG-GGCGGCc -3'
miRNA:   3'- uGCC-CGgUgUUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 167598 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 167527 0.66 0.961874
Target:  5'- cCGGGCCGCGc--CCCCGGCc----- -3'
miRNA:   3'- uGCCCGGUGUuuuGGGGCUGuugucg -5'
28928 3' -54 NC_006146.1 + 167118 0.68 0.909431
Target:  5'- gUGGGCCACAAAGgCguaaUCGGCAAgUGGCa -3'
miRNA:   3'- uGCCCGGUGUUUUgG----GGCUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 165969 0.73 0.705929
Target:  5'- cCGGGgCACAGAGCacggccaCCCGACAGCGa- -3'
miRNA:   3'- uGCCCgGUGUUUUG-------GGGCUGUUGUcg -5'
28928 3' -54 NC_006146.1 + 165658 0.66 0.961874
Target:  5'- uUGGGuccgugaccCCACA--GCCCCGAgGcCGGCa -3'
miRNA:   3'- uGCCC---------GGUGUuuUGGGGCUgUuGUCG- -5'
28928 3' -54 NC_006146.1 + 165502 0.67 0.946124
Target:  5'- -aGGGCaggACGcAGCCCCGGaugccacGCAGCa -3'
miRNA:   3'- ugCCCGg--UGUuUUGGGGCUgu-----UGUCG- -5'
28928 3' -54 NC_006146.1 + 165318 0.69 0.890118
Target:  5'- uCGGGUgaGCAGAGCCCCGAgAuguuGCu -3'
miRNA:   3'- uGCCCGg-UGUUUUGGGGCUgUugu-CG- -5'
28928 3' -54 NC_006146.1 + 164546 0.7 0.845439
Target:  5'- -aGGGCCACGAagGACCuuGAguaAACGGa -3'
miRNA:   3'- ugCCCGGUGUU--UUGGggCUg--UUGUCg -5'
28928 3' -54 NC_006146.1 + 162333 0.68 0.92112
Target:  5'- cUGGuGCUGCA--GCCCgGGCuGCAGCu -3'
miRNA:   3'- uGCC-CGGUGUuuUGGGgCUGuUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.