miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 3' -53.7 NC_006146.1 + 164019 0.66 0.975313
Target:  5'- gGCGGCCUugUugGCcaaaaauagcaccggGAGAAcCAGGugCa -3'
miRNA:   3'- gUGCCGGGugA--CG---------------UUCUUuGUCCugG- -5'
28929 3' -53.7 NC_006146.1 + 39995 0.66 0.974271
Target:  5'- uGCGGCCCGuaguggccggugUgggcguaGCAGGggGCcugcugGGGGCCg -3'
miRNA:   3'- gUGCCGGGU------------Ga------CGUUCuuUG------UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 170607 0.66 0.974271
Target:  5'- aACGGCCUuccuucgcugaGCgGCAuauGAGuuaacCAGGGCCg -3'
miRNA:   3'- gUGCCGGG-----------UGaCGUu--CUUu----GUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 69913 0.66 0.974271
Target:  5'- --aGGCCgAgaGgAAGAcgugcuuguagGACAGGACCu -3'
miRNA:   3'- gugCCGGgUgaCgUUCU-----------UUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 118927 0.66 0.974271
Target:  5'- -cCGGCCCGCaUGCcGGAGACcuccccgucGGcGCCa -3'
miRNA:   3'- guGCCGGGUG-ACGuUCUUUG---------UCcUGG- -5'
28929 3' -53.7 NC_006146.1 + 122555 0.66 0.974271
Target:  5'- -cCGGCCCGCUGgcc-AGACuGGACg -3'
miRNA:   3'- guGCCGGGUGACguucUUUGuCCUGg -5'
28929 3' -53.7 NC_006146.1 + 34046 0.66 0.974271
Target:  5'- cCGgGGCCUAUgccgGCcGGGGgucccguggcACGGGGCCg -3'
miRNA:   3'- -GUgCCGGGUGa---CGuUCUU----------UGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 139573 0.66 0.973468
Target:  5'- --aGGCCUguaagcccaaugagGCUGCGGGggGCgAGGAg- -3'
miRNA:   3'- gugCCGGG--------------UGACGUUCuuUG-UCCUgg -5'
28929 3' -53.7 NC_006146.1 + 124049 0.66 0.97237
Target:  5'- uCAUGGCCCcaguguACUGaaacuuguugccguuGAugGACAGGGCCa -3'
miRNA:   3'- -GUGCCGGG------UGACguu------------CU--UUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 76568 0.66 0.971525
Target:  5'- -uCGGCagagCAUUGCGGGAu--GGGGCCg -3'
miRNA:   3'- guGCCGg---GUGACGUUCUuugUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 85655 0.66 0.971525
Target:  5'- -uUGGCCCACggggacccUGguGGAugaaAGGGCCu -3'
miRNA:   3'- guGCCGGGUG--------ACguUCUuug-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 103322 0.66 0.971525
Target:  5'- cCACGGgCCCcccaaaguaaugAUUGguGGAGAUGGGAgCg -3'
miRNA:   3'- -GUGCC-GGG------------UGACguUCUUUGUCCUgG- -5'
28929 3' -53.7 NC_006146.1 + 136691 0.66 0.971525
Target:  5'- cCugGGUCCGCUGCcccgcuccggcGGggGguGG-CCg -3'
miRNA:   3'- -GugCCGGGUGACGu----------UCuuUguCCuGG- -5'
28929 3' -53.7 NC_006146.1 + 75823 0.66 0.971525
Target:  5'- --aGGCCCugcgggacaUGCAccagGGGAGCucuGGACCa -3'
miRNA:   3'- gugCCGGGug-------ACGU----UCUUUGu--CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 33321 0.66 0.971525
Target:  5'- -cCGGCCCgaGCUcCAGGAccgGGCAgcGGACCc -3'
miRNA:   3'- guGCCGGG--UGAcGUUCU---UUGU--CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 99696 0.66 0.971525
Target:  5'- uCGaaGCCCcCgGCGGGAGugAGGAUCu -3'
miRNA:   3'- -GUgcCGGGuGaCGUUCUUugUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 125978 0.66 0.971239
Target:  5'- gCugGGUCCgcacucgcgGCUGCGaggcuugGGAGugGGGGCg -3'
miRNA:   3'- -GugCCGGG---------UGACGU-------UCUUugUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 128078 0.66 0.968575
Target:  5'- -cCGGCCUcaUGCAGGugcgggaGGGGCCg -3'
miRNA:   3'- guGCCGGGugACGUUCuuug---UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 122957 0.66 0.968575
Target:  5'- aGCcuGUCCACgcaGCGGGAGGCGGGgagguGCCa -3'
miRNA:   3'- gUGc-CGGGUGa--CGUUCUUUGUCC-----UGG- -5'
28929 3' -53.7 NC_006146.1 + 144837 0.66 0.968575
Target:  5'- -cCGGCCCACguugcgGCGGGccaauuGCAGcGGCUc -3'
miRNA:   3'- guGCCGGGUGa-----CGUUCuu----UGUC-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.