miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 5' -61.7 NC_006146.1 + 97289 0.65 0.700976
Target:  5'- -cGCUCCUucuccGuuuucucuucuucCCCUucugUGGUGGUGGCGGu -3'
miRNA:   3'- uaCGAGGA-----Cu------------GGGA----ACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 24278 0.66 0.685468
Target:  5'- -gGcCUCgUGACCC-UGGcCGGgGGCuGGa -3'
miRNA:   3'- uaC-GAGgACUGGGaACC-GCCgCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 13106 0.66 0.685468
Target:  5'- -cGgaCCUGGCCCUguuugUGGaCGGgGGCu- -3'
miRNA:   3'- uaCgaGGACUGGGA-----ACC-GCCgCCGcc -5'
28929 5' -61.7 NC_006146.1 + 119325 0.66 0.685467
Target:  5'- -gGCUCCcccgGGCCCcuccCGGCGGCGc -3'
miRNA:   3'- uaCGAGGa---CUGGGaaccGCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 165595 0.66 0.685467
Target:  5'- --aUUCCUGugGCCCaagUGGUcaucGGCGGUGGg -3'
miRNA:   3'- uacGAGGAC--UGGGa--ACCG----CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 53194 0.66 0.67572
Target:  5'- -gGC-CCcGGCCUUgGGgGGCGGCGu -3'
miRNA:   3'- uaCGaGGaCUGGGAaCCgCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 48334 0.66 0.67572
Target:  5'- cUGCUCCUGACUaccaaugGGaCGGUaGUGGa -3'
miRNA:   3'- uACGAGGACUGGgaa----CC-GCCGcCGCC- -5'
28929 5' -61.7 NC_006146.1 + 115530 0.66 0.67572
Target:  5'- gGUGCcCCgggcGuCCCgcGcGCGGUGGCGGg -3'
miRNA:   3'- -UACGaGGa---CuGGGaaC-CGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 127569 0.66 0.66594
Target:  5'- -cGcCUgCUGGCCCUgGGCGGCcgaggccgcgccGGcCGGg -3'
miRNA:   3'- uaC-GAgGACUGGGAaCCGCCG------------CC-GCC- -5'
28929 5' -61.7 NC_006146.1 + 103679 0.66 0.66594
Target:  5'- -gGCuUCCUGugCC-UGGcCGGCcaGGCGa -3'
miRNA:   3'- uaCG-AGGACugGGaACC-GCCG--CCGCc -5'
28929 5' -61.7 NC_006146.1 + 46765 0.66 0.665939
Target:  5'- -cGcCUCCcGACCCcgGGCGGaUGGCuGGc -3'
miRNA:   3'- uaC-GAGGaCUGGGaaCCGCC-GCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 44235 0.66 0.665939
Target:  5'- -cGuCUCCucUGGCCg--GGCGGCGGUGu -3'
miRNA:   3'- uaC-GAGG--ACUGGgaaCCGCCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 71378 0.66 0.656133
Target:  5'- -cGuCUCCUGACUgcUGGUGGCcgagGGCGa -3'
miRNA:   3'- uaC-GAGGACUGGgaACCGCCG----CCGCc -5'
28929 5' -61.7 NC_006146.1 + 128531 0.66 0.64631
Target:  5'- -cGCcCCUcGCCCacccUGGCGGC-GCGGg -3'
miRNA:   3'- uaCGaGGAcUGGGa---ACCGCCGcCGCC- -5'
28929 5' -61.7 NC_006146.1 + 40586 0.66 0.64631
Target:  5'- -aGgUCCUGGCCCUgGGCGGCc---- -3'
miRNA:   3'- uaCgAGGACUGGGAaCCGCCGccgcc -5'
28929 5' -61.7 NC_006146.1 + 99149 0.66 0.64631
Target:  5'- -gGCUCCagcGACC---GGCaGGUGGCGGa -3'
miRNA:   3'- uaCGAGGa--CUGGgaaCCG-CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 88564 0.67 0.626639
Target:  5'- gGUGCUCCguaACCCggauauggagcUGGUGGgGGCuGGg -3'
miRNA:   3'- -UACGAGGac-UGGGa----------ACCGCCgCCG-CC- -5'
28929 5' -61.7 NC_006146.1 + 18900 0.67 0.616806
Target:  5'- uGUGCUUCUaccgagacACCCUgacGGUGGUGGgGGg -3'
miRNA:   3'- -UACGAGGAc-------UGGGAa--CCGCCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 118160 0.67 0.616806
Target:  5'- -gGuCUCCc--CCCUUGGCGGUGGUa- -3'
miRNA:   3'- uaC-GAGGacuGGGAACCGCCGCCGcc -5'
28929 5' -61.7 NC_006146.1 + 101661 0.67 0.606984
Target:  5'- -cGgaCCUGGCCCUggggggaaacgGGCuacgGGCGGCGc -3'
miRNA:   3'- uaCgaGGACUGGGAa----------CCG----CCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.