miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 104657 0.65 0.99528
Target:  5'- cCCCCAccGUGgagaaugccugcgCCgCGAUAGAGGgGCAGc -3'
miRNA:   3'- -GGGGU--UACa------------GGgGCUGUUUUCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 161518 0.66 0.994833
Target:  5'- aCCCCAAgggGUCCUCGG---GGGCAgAu -3'
miRNA:   3'- -GGGGUUa--CAGGGGCUguuUUCGUgUc -5'
28931 5' -51.4 NC_006146.1 + 162186 0.66 0.994833
Target:  5'- aUCCAcgGUCCCCGu---AGGCugAc -3'
miRNA:   3'- gGGGUuaCAGGGGCuguuUUCGugUc -5'
28931 5' -51.4 NC_006146.1 + 43915 0.66 0.994833
Target:  5'- gCUCCGGgaccgcGUCgCCCGGCAGucGgGCGGg -3'
miRNA:   3'- -GGGGUUa-----CAG-GGGCUGUUuuCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 170067 0.66 0.994833
Target:  5'- gCCCCuAUG-CCCCaagguGAgGAGAGC-CAGa -3'
miRNA:   3'- -GGGGuUACaGGGG-----CUgUUUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 49036 0.66 0.994833
Target:  5'- gCCCGAUGUCgUagaaGACGcGAGCGUAGg -3'
miRNA:   3'- gGGGUUACAGgGg---CUGUuUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 128924 0.66 0.994833
Target:  5'- cCCCCAGUGgaCgaGGCAguAGAGCACAc -3'
miRNA:   3'- -GGGGUUACagGggCUGU--UUUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 16963 0.66 0.994013
Target:  5'- cCCCCAGccgcccagucucUGcCUCCaGGCAAGGGCGCc- -3'
miRNA:   3'- -GGGGUU------------ACaGGGG-CUGUUUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 149845 0.66 0.994013
Target:  5'- -gCCAggG-CCUCGGCGA-AGCGCAGc -3'
miRNA:   3'- ggGGUuaCaGGGGCUGUUuUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 53660 0.66 0.994013
Target:  5'- aCCCCccUGgCCCCGGCcgcuuuccaGGAAGCcCGGg -3'
miRNA:   3'- -GGGGuuACaGGGGCUG---------UUUUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 82629 0.66 0.994013
Target:  5'- uCCCCAGaGg-CCCGACcc-AGCACAc -3'
miRNA:   3'- -GGGGUUaCagGGGCUGuuuUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 103124 0.66 0.994013
Target:  5'- gCCgCCGucacGUCCCUGGCc-GAGCugGGg -3'
miRNA:   3'- -GG-GGUua--CAGGGGCUGuuUUCGugUC- -5'
28931 5' -51.4 NC_006146.1 + 45220 0.66 0.994013
Target:  5'- cUCCCGGacucUGgaaCCgGACGGAGGCugGGg -3'
miRNA:   3'- -GGGGUU----ACag-GGgCUGUUUUCGugUC- -5'
28931 5' -51.4 NC_006146.1 + 7286 0.66 0.993091
Target:  5'- cCUCCAAUGUCCCU-----AAGCACc- -3'
miRNA:   3'- -GGGGUUACAGGGGcuguuUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 48420 0.66 0.993091
Target:  5'- aCCCCGccgccGUCCCCGAgCAAcgcuCGCAGu -3'
miRNA:   3'- -GGGGUua---CAGGGGCU-GUUuuc-GUGUC- -5'
28931 5' -51.4 NC_006146.1 + 325 0.66 0.993091
Target:  5'- gCCCAGcUGUCauucuCCCGGCcaacGGGAGCAgAGg -3'
miRNA:   3'- gGGGUU-ACAG-----GGGCUG----UUUUCGUgUC- -5'
28931 5' -51.4 NC_006146.1 + 136842 0.66 0.993091
Target:  5'- gCCCCGugccacgGgacCCCCGGCc--GGCAUAGg -3'
miRNA:   3'- -GGGGUua-----Ca--GGGGCUGuuuUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 79259 0.66 0.99206
Target:  5'- gCCCCAAacagGUCUUCGACcgagaaGGAGGCGUAGa -3'
miRNA:   3'- -GGGGUUa---CAGGGGCUG------UUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 126146 0.66 0.99206
Target:  5'- gCCCGccGggCCCCGACAAc--CACAGc -3'
miRNA:   3'- gGGGUuaCa-GGGGCUGUUuucGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 126832 0.66 0.99206
Target:  5'- aCCCCAG---UCCCGGCAugcAGGCGCc- -3'
miRNA:   3'- -GGGGUUacaGGGGCUGUu--UUCGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.