miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 5' -58 NC_006146.1 + 124785 0.66 0.818858
Target:  5'- cAGGGCCCgGGCA---UGCCUGCUg- -3'
miRNA:   3'- cUUCCGGGaCCGUgucACGGGUGAaa -5'
28932 5' -58 NC_006146.1 + 39041 0.66 0.818858
Target:  5'- uGggGGCCagcaGGCAgGG-GCCCugUg- -3'
miRNA:   3'- -CuuCCGGga--CCGUgUCaCGGGugAaa -5'
28932 5' -58 NC_006146.1 + 141927 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 145005 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 148083 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 151161 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 154239 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 157317 0.66 0.810111
Target:  5'- gGAGGGCCCUGGgAgGccccUGUCCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCgUgUc---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 20189 0.66 0.809227
Target:  5'- aGAGGGCCCccgggGGCGCAGgagGCUgggcaugUACUg- -3'
miRNA:   3'- -CUUCCGGGa----CCGUGUCa--CGG-------GUGAaa -5'
28932 5' -58 NC_006146.1 + 139657 0.66 0.801201
Target:  5'- aGGAGGCCU--GCAUGGaGCCCACg-- -3'
miRNA:   3'- -CUUCCGGGacCGUGUCaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 148159 0.66 0.800301
Target:  5'- cAGGGCCCgGGUcuucucuACGGccaUGCCCACg-- -3'
miRNA:   3'- cUUCCGGGaCCG-------UGUC---ACGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 75370 0.66 0.792136
Target:  5'- uAGGGaCCCUGGC-CAG-GCgCCGCa-- -3'
miRNA:   3'- cUUCC-GGGACCGuGUCaCG-GGUGaaa -5'
28932 5' -58 NC_006146.1 + 81792 0.66 0.792136
Target:  5'- cGggGGUgccaCCUGGgGCAGUGCCgguaGCa-- -3'
miRNA:   3'- -CuuCCG----GGACCgUGUCACGGg---UGaaa -5'
28932 5' -58 NC_006146.1 + 76749 0.66 0.792136
Target:  5'- uGGAGGCCCacgGGCACgAGcaGCCCGa--- -3'
miRNA:   3'- -CUUCCGGGa--CCGUG-UCa-CGGGUgaaa -5'
28932 5' -58 NC_006146.1 + 115385 0.66 0.782924
Target:  5'- uGGAGGCCCUGGCc----GCUCGCg-- -3'
miRNA:   3'- -CUUCCGGGACCGugucaCGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 150326 0.66 0.773576
Target:  5'- ---cGCCCgGGCGCAG-GCCgGCUa- -3'
miRNA:   3'- cuucCGGGaCCGUGUCaCGGgUGAaa -5'
28932 5' -58 NC_006146.1 + 15066 0.67 0.7641
Target:  5'- aGGAGGCaCUGGCGgGG-GCuCCGCUg- -3'
miRNA:   3'- -CUUCCGgGACCGUgUCaCG-GGUGAaa -5'
28932 5' -58 NC_006146.1 + 86318 0.67 0.7641
Target:  5'- aGGAGGCCCUgGGCAgGGUcuugaucaggGCCCuCa-- -3'
miRNA:   3'- -CUUCCGGGA-CCGUgUCA----------CGGGuGaaa -5'
28932 5' -58 NC_006146.1 + 39881 0.67 0.754506
Target:  5'- aGGAGGCUgaGGCugAGcgGCCUGCg-- -3'
miRNA:   3'- -CUUCCGGgaCCGugUCa-CGGGUGaaa -5'
28932 5' -58 NC_006146.1 + 4874 0.67 0.754506
Target:  5'- cGggGGCCaCaGGCACccccgaUGCCCACa-- -3'
miRNA:   3'- -CuuCCGG-GaCCGUGuc----ACGGGUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.