Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28933 | 5' | -56 | NC_006146.1 | + | 23363 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 50958 | 0.66 | 0.930764 |
Target: 5'- cCAcCGA-GACCUccGGCagCAGCGCCg -3' miRNA: 3'- -GUuGCUaCUGGGauCCGgaGUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 20285 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 129299 | 0.66 | 0.930764 |
Target: 5'- cCAGCGGaccaGCCCcccGGGCCUCucCGCCu -3' miRNA: 3'- -GUUGCUac--UGGGa--UCCGGAGucGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 170082 | 0.66 | 0.930764 |
Target: 5'- uGGgGAUGGCCggcgggagGGGCC--GGCGCCg -3' miRNA: 3'- gUUgCUACUGGga------UCCGGagUCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 29519 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 4073 | 0.66 | 0.930764 |
Target: 5'- -cACGcgGACCC-GGGCCgcgucgaCAGCaCCg -3' miRNA: 3'- guUGCuaCUGGGaUCCGGa------GUCGcGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 146838 | 0.66 | 0.930764 |
Target: 5'- cCAGCGuagaGCCC-GGGCCuggcUCGGgGCCg -3' miRNA: 3'- -GUUGCuac-UGGGaUCCGG----AGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 26441 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 17207 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 14129 | 0.66 | 0.930764 |
Target: 5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3' miRNA: 3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 15750 | 0.66 | 0.930764 |
Target: 5'- gCAACG-UGGCCCU-GGCCcgcugcugCGaCGCCg -3' miRNA: 3'- -GUUGCuACUGGGAuCCGGa-------GUcGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 93424 | 0.66 | 0.925537 |
Target: 5'- uCAGgGAcaGcCCCUGGGCCUUGGCuauggucaugGCCa -3' miRNA: 3'- -GUUgCUa-CuGGGAUCCGGAGUCG----------CGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 61764 | 0.66 | 0.925537 |
Target: 5'- gCAGCG---GCCg-AGGCCUCuGUGCCc -3' miRNA: 3'- -GUUGCuacUGGgaUCCGGAGuCGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 43827 | 0.66 | 0.925537 |
Target: 5'- -cGCccUGGCCCUuucGGCUUCccGCGCCg -3' miRNA: 3'- guUGcuACUGGGAu--CCGGAGu-CGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 68492 | 0.66 | 0.925537 |
Target: 5'- cCAugGGUG-CCCUcuGGUCUCuuUGCCg -3' miRNA: 3'- -GUugCUACuGGGAu-CCGGAGucGCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 105570 | 0.66 | 0.925001 |
Target: 5'- gGAgGAggccgGACCCUcaccauacucgagAGGCCgcaagaggCAGCGCa -3' miRNA: 3'- gUUgCUa----CUGGGA-------------UCCGGa-------GUCGCGg -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 12157 | 0.66 | 0.922288 |
Target: 5'- gCAGCGGagaGACCCcuacgugaucucggGGGCCUCGG-GCUc -3' miRNA: 3'- -GUUGCUa--CUGGGa-------------UCCGGAGUCgCGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 22145 | 0.66 | 0.920075 |
Target: 5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3' miRNA: 3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5' |
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28933 | 5' | -56 | NC_006146.1 | + | 25223 | 0.66 | 0.920075 |
Target: 5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3' miRNA: 3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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