miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 23363 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 50958 0.66 0.930764
Target:  5'- cCAcCGA-GACCUccGGCagCAGCGCCg -3'
miRNA:   3'- -GUuGCUaCUGGGauCCGgaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 20285 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 129299 0.66 0.930764
Target:  5'- cCAGCGGaccaGCCCcccGGGCCUCucCGCCu -3'
miRNA:   3'- -GUUGCUac--UGGGa--UCCGGAGucGCGG- -5'
28933 5' -56 NC_006146.1 + 170082 0.66 0.930764
Target:  5'- uGGgGAUGGCCggcgggagGGGCC--GGCGCCg -3'
miRNA:   3'- gUUgCUACUGGga------UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 29519 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 4073 0.66 0.930764
Target:  5'- -cACGcgGACCC-GGGCCgcgucgaCAGCaCCg -3'
miRNA:   3'- guUGCuaCUGGGaUCCGGa------GUCGcGG- -5'
28933 5' -56 NC_006146.1 + 146838 0.66 0.930764
Target:  5'- cCAGCGuagaGCCC-GGGCCuggcUCGGgGCCg -3'
miRNA:   3'- -GUUGCuac-UGGGaUCCGG----AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 26441 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 17207 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 14129 0.66 0.930764
Target:  5'- ---aGGUGACCCUcGGGCCU-GGCuuaCCa -3'
miRNA:   3'- guugCUACUGGGA-UCCGGAgUCGc--GG- -5'
28933 5' -56 NC_006146.1 + 15750 0.66 0.930764
Target:  5'- gCAACG-UGGCCCU-GGCCcgcugcugCGaCGCCg -3'
miRNA:   3'- -GUUGCuACUGGGAuCCGGa-------GUcGCGG- -5'
28933 5' -56 NC_006146.1 + 93424 0.66 0.925537
Target:  5'- uCAGgGAcaGcCCCUGGGCCUUGGCuauggucaugGCCa -3'
miRNA:   3'- -GUUgCUa-CuGGGAUCCGGAGUCG----------CGG- -5'
28933 5' -56 NC_006146.1 + 61764 0.66 0.925537
Target:  5'- gCAGCG---GCCg-AGGCCUCuGUGCCc -3'
miRNA:   3'- -GUUGCuacUGGgaUCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 43827 0.66 0.925537
Target:  5'- -cGCccUGGCCCUuucGGCUUCccGCGCCg -3'
miRNA:   3'- guUGcuACUGGGAu--CCGGAGu-CGCGG- -5'
28933 5' -56 NC_006146.1 + 68492 0.66 0.925537
Target:  5'- cCAugGGUG-CCCUcuGGUCUCuuUGCCg -3'
miRNA:   3'- -GUugCUACuGGGAu-CCGGAGucGCGG- -5'
28933 5' -56 NC_006146.1 + 105570 0.66 0.925001
Target:  5'- gGAgGAggccgGACCCUcaccauacucgagAGGCCgcaagaggCAGCGCa -3'
miRNA:   3'- gUUgCUa----CUGGGA-------------UCCGGa-------GUCGCGg -5'
28933 5' -56 NC_006146.1 + 12157 0.66 0.922288
Target:  5'- gCAGCGGagaGACCCcuacgugaucucggGGGCCUCGG-GCUc -3'
miRNA:   3'- -GUUGCUa--CUGGGa-------------UCCGGAGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 22145 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5'
28933 5' -56 NC_006146.1 + 25223 0.66 0.920075
Target:  5'- gUggUGGUGAgCCUGGuGCCUCuGGagGCCc -3'
miRNA:   3'- -GuuGCUACUgGGAUC-CGGAG-UCg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.