miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 124815 0.7 0.747342
Target:  5'- gCGACGGUGcuucGCCCccgAGGCCcugCAGCaGCUa -3'
miRNA:   3'- -GUUGCUAC----UGGGa--UCCGGa--GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 49755 0.7 0.737689
Target:  5'- gGGCGcgcGGCCC-AGGCC-CAGaCGCCg -3'
miRNA:   3'- gUUGCua-CUGGGaUCCGGaGUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 146134 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 55655 0.74 0.498154
Target:  5'- -cACGGUGAauCCCUGGGCCUCucaGCUg -3'
miRNA:   3'- guUGCUACU--GGGAUCCGGAGucgCGG- -5'
28933 5' -56 NC_006146.1 + 151464 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 114710 0.7 0.76634
Target:  5'- -cGCGAgacccgGGCCCUGgcGGCCgaguaUCGGCGCa -3'
miRNA:   3'- guUGCUa-----CUGGGAU--CCGG-----AGUCGCGg -5'
28933 5' -56 NC_006146.1 + 50896 0.7 0.71812
Target:  5'- uGGCGcgGGugcggCCUGGGCCUCcGUGCCc -3'
miRNA:   3'- gUUGCuaCUg----GGAUCCGGAGuCGCGG- -5'
28933 5' -56 NC_006146.1 + 56734 0.75 0.488634
Target:  5'- -cAUGGUGACCCUgcugcccaGGGCCagCAuGCGCCu -3'
miRNA:   3'- guUGCUACUGGGA--------UCCGGa-GU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 19472 0.7 0.76634
Target:  5'- aCAACGAcuuugUGACCUUuGGCUgguaCAGCuGCCg -3'
miRNA:   3'- -GUUGCU-----ACUGGGAuCCGGa---GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 71950 0.76 0.407261
Target:  5'- cCGACGAguuUG-UCCUGGGCUUCguGGCGCCg -3'
miRNA:   3'- -GUUGCU---ACuGGGAUCCGGAG--UCGCGG- -5'
28933 5' -56 NC_006146.1 + 122659 0.7 0.726966
Target:  5'- gCGGCGggGGCCCUccgcgcGGCgCUCAcccaggcGCGCCa -3'
miRNA:   3'- -GUUGCuaCUGGGAu-----CCG-GAGU-------CGCGG- -5'
28933 5' -56 NC_006146.1 + 41476 0.7 0.756895
Target:  5'- gCGGCGGUGAUguugCUGGGCCUUggGGUGCg -3'
miRNA:   3'- -GUUGCUACUGg---GAUCCGGAG--UCGCGg -5'
28933 5' -56 NC_006146.1 + 158447 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 149212 0.71 0.657954
Target:  5'- --cCGAgGGCCUgaaAGGCCcCGGCGCCu -3'
miRNA:   3'- guuGCUaCUGGGa--UCCGGaGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 23330 0.73 0.556827
Target:  5'- -cGCGAguaUGGCCCUGcagaccGaCCUCAGCGCCu -3'
miRNA:   3'- guUGCU---ACUGGGAU------CcGGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 41052 0.74 0.507755
Target:  5'- -cGCGgcGGCCCUggGGGCCUCGGgGUg -3'
miRNA:   3'- guUGCuaCUGGGA--UCCGGAGUCgCGg -5'
28933 5' -56 NC_006146.1 + 142895 0.69 0.808133
Target:  5'- ---aGGUGGCCUggccugggcugugAGGCCUCgAGgGCCg -3'
miRNA:   3'- guugCUACUGGGa------------UCCGGAG-UCgCGG- -5'
28933 5' -56 NC_006146.1 + 154542 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 142230 0.69 0.784868
Target:  5'- gGAgGcgGACCCgagGGGCuCUgGGgCGCCg -3'
miRNA:   3'- gUUgCuaCUGGGa--UCCG-GAgUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 114761 0.69 0.775667
Target:  5'- -cGCGGggagGGCUCUcGGUCUCGGgGCCc -3'
miRNA:   3'- guUGCUa---CUGGGAuCCGGAGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.