miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 125741 0.66 0.929072
Target:  5'- cCGCCGAUccgagGCCUCCgucccaCCCAGCccg-CAa -3'
miRNA:   3'- -GCGGCUGa----UGGAGG------GGGUCGauaaGU- -5'
28936 5' -56 NC_006146.1 + 55938 0.66 0.929072
Target:  5'- cCGCCcucuCUGCCUCCUCCAGggcacUCAu -3'
miRNA:   3'- -GCGGcu--GAUGGAGGGGGUCgaua-AGU- -5'
28936 5' -56 NC_006146.1 + 13295 0.66 0.929072
Target:  5'- cCGCCcgcGACUACC-CCCaCguGCUGggCAc -3'
miRNA:   3'- -GCGG---CUGAUGGaGGG-GguCGAUaaGU- -5'
28936 5' -56 NC_006146.1 + 68143 0.66 0.929072
Target:  5'- aCGCCacgcaggaaaggGGCUGCCUCCUCCccgggcaggcgcAGCg--UCAg -3'
miRNA:   3'- -GCGG------------CUGAUGGAGGGGG------------UCGauaAGU- -5'
28936 5' -56 NC_006146.1 + 168535 0.66 0.929072
Target:  5'- cCGCgGAC-GCCUgUCCCGGCUcgUa- -3'
miRNA:   3'- -GCGgCUGaUGGAgGGGGUCGAuaAgu -5'
28936 5' -56 NC_006146.1 + 106653 0.66 0.928551
Target:  5'- gGCCGGCUGgucagggccguccUCUCCCCgGGCa----- -3'
miRNA:   3'- gCGGCUGAU-------------GGAGGGGgUCGauaagu -5'
28936 5' -56 NC_006146.1 + 69641 0.66 0.928551
Target:  5'- gGuuGACUGCCcccagcaccaugUCCCCCAccauaaaguagaaGCUGUUg- -3'
miRNA:   3'- gCggCUGAUGG------------AGGGGGU-------------CGAUAAgu -5'
28936 5' -56 NC_006146.1 + 56688 0.66 0.92376
Target:  5'- uCGCCGggcuGCUACCcCCUCCGGCc----- -3'
miRNA:   3'- -GCGGC----UGAUGGaGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 84440 0.66 0.92376
Target:  5'- aGCCcaGGCUGCCcCCucaaagCCCAGCUGccccUUCAa -3'
miRNA:   3'- gCGG--CUGAUGGaGG------GGGUCGAU----AAGU- -5'
28936 5' -56 NC_006146.1 + 40620 0.66 0.918211
Target:  5'- cCGCCG-CUGCUUCUCCCGcGUUAc--- -3'
miRNA:   3'- -GCGGCuGAUGGAGGGGGU-CGAUaagu -5'
28936 5' -56 NC_006146.1 + 58059 0.66 0.918211
Target:  5'- cCGCCGGCUACCUgucggCCCUGcGCUAc--- -3'
miRNA:   3'- -GCGGCUGAUGGAg----GGGGU-CGAUaagu -5'
28936 5' -56 NC_006146.1 + 120484 0.66 0.918211
Target:  5'- uCGCUGcGCUGCUUCCugCCCguggaGGCUAUUUAu -3'
miRNA:   3'- -GCGGC-UGAUGGAGG--GGG-----UCGAUAAGU- -5'
28936 5' -56 NC_006146.1 + 134670 0.66 0.918211
Target:  5'- aGCCGccCUGCCUCcuCCCCGGCc----- -3'
miRNA:   3'- gCGGCu-GAUGGAG--GGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 128615 0.66 0.912427
Target:  5'- gCGCUgGGCUACCUggccUCCCCGGUg--UCGc -3'
miRNA:   3'- -GCGG-CUGAUGGA----GGGGGUCGauaAGU- -5'
28936 5' -56 NC_006146.1 + 65032 0.66 0.906409
Target:  5'- gGCCG-CUAUCUugccUCCCCGGCUuccUCGa -3'
miRNA:   3'- gCGGCuGAUGGA----GGGGGUCGAua-AGU- -5'
28936 5' -56 NC_006146.1 + 121360 0.66 0.906409
Target:  5'- gGCCGGCgugGCCUccgCCCCCAGa------ -3'
miRNA:   3'- gCGGCUGa--UGGA---GGGGGUCgauaagu -5'
28936 5' -56 NC_006146.1 + 121007 0.66 0.904558
Target:  5'- -uCCGACUACCUCuccuaccuggaggaCCCCAGCc----- -3'
miRNA:   3'- gcGGCUGAUGGAG--------------GGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 51036 0.66 0.900158
Target:  5'- aGCUcGCUgGCCUUCCCCcGCUGUUa- -3'
miRNA:   3'- gCGGcUGA-UGGAGGGGGuCGAUAAgu -5'
28936 5' -56 NC_006146.1 + 124660 0.66 0.900158
Target:  5'- cCGCCG-CUucaccggcCCUCCCuCCGGCU--UCAu -3'
miRNA:   3'- -GCGGCuGAu-------GGAGGG-GGUCGAuaAGU- -5'
28936 5' -56 NC_006146.1 + 98875 0.66 0.900158
Target:  5'- gCGCCGAgUcaccACCcacUCCCCC-GCUAcUCAc -3'
miRNA:   3'- -GCGGCUgA----UGG---AGGGGGuCGAUaAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.