miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2894 3' -55.4 NC_001493.1 + 129881 0.66 0.921566
Target:  5'- gAGGGCCagggUCACgaGGuCGuCACCCGGGg -3'
miRNA:   3'- gUUCUGGaa--AGUG--CC-GCcGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 14327 0.66 0.921566
Target:  5'- gAGGGCCagggUCACgaGGuCGuCACCCGGGg -3'
miRNA:   3'- gUUCUGGaa--AGUG--CC-GCcGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 29744 0.66 0.915843
Target:  5'- aGAGGuCCa-UCACGGUGGUcCCgAGGg -3'
miRNA:   3'- gUUCU-GGaaAGUGCCGCCGuGGgUCC- -5'
2894 3' -55.4 NC_001493.1 + 87018 0.66 0.915843
Target:  5'- -cGGACCcg--ACGGUGGCGCUgCGGGu -3'
miRNA:   3'- guUCUGGaaagUGCCGCCGUGG-GUCC- -5'
2894 3' -55.4 NC_001493.1 + 92627 0.66 0.915843
Target:  5'- uGAGAUag--UGCGGCGGCGagaUCAGGa -3'
miRNA:   3'- gUUCUGgaaaGUGCCGCCGUg--GGUCC- -5'
2894 3' -55.4 NC_001493.1 + 53759 0.66 0.915843
Target:  5'- -uGGAUC--UCAuCGGCGGUGCCCAu- -3'
miRNA:   3'- guUCUGGaaAGU-GCCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 14849 0.66 0.915257
Target:  5'- gAAGACCUgcUCACGGCcGUcaucaucACCguGGg -3'
miRNA:   3'- gUUCUGGAa-AGUGCCGcCG-------UGGguCC- -5'
2894 3' -55.4 NC_001493.1 + 130403 0.66 0.915257
Target:  5'- gAAGACCUgcUCACGGCcGUcaucaucACCguGGg -3'
miRNA:   3'- gUUCUGGAa-AGUGCCGcCG-------UGGguCC- -5'
2894 3' -55.4 NC_001493.1 + 36224 0.66 0.909878
Target:  5'- --cGGCCUg-CGCGGgGGUGCUCAGu -3'
miRNA:   3'- guuCUGGAaaGUGCCgCCGUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 25406 0.66 0.89723
Target:  5'- aCAGGGCCaguaGCGGCGacGCACggaauCCAGGu -3'
miRNA:   3'- -GUUCUGGaaagUGCCGC--CGUG-----GGUCC- -5'
2894 3' -55.4 NC_001493.1 + 95881 0.66 0.89723
Target:  5'- cCGAGugCcaaCugGGgGGCGCCUAcGGa -3'
miRNA:   3'- -GUUCugGaaaGugCCgCCGUGGGU-CC- -5'
2894 3' -55.4 NC_001493.1 + 35842 0.66 0.890552
Target:  5'- gAAGACCccucUCGCuGCGGCGCUCGu- -3'
miRNA:   3'- gUUCUGGaa--AGUGcCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 13554 0.67 0.883644
Target:  5'- --cGACCg--CGCGGCcGCACaCGGGg -3'
miRNA:   3'- guuCUGGaaaGUGCCGcCGUGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 31352 0.67 0.883644
Target:  5'- -cAGACCgcggcCGCGGCGGUAUUCAa- -3'
miRNA:   3'- guUCUGGaaa--GUGCCGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 42902 0.67 0.883644
Target:  5'- --uGGCU--UCACGGCGG-GCUCGGGu -3'
miRNA:   3'- guuCUGGaaAGUGCCGCCgUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 129109 0.67 0.883644
Target:  5'- --cGACCg--CGCGGCcGCACaCGGGg -3'
miRNA:   3'- guuCUGGaaaGUGCCGcCGUGgGUCC- -5'
2894 3' -55.4 NC_001493.1 + 87596 0.67 0.876508
Target:  5'- aGAGACUgagCACaaGGC-GCACCCAGa -3'
miRNA:   3'- gUUCUGGaaaGUG--CCGcCGUGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 42040 0.67 0.869151
Target:  5'- cCGAGugCgaucaccccgUUCAUucgugauaggGGCGGC-CCCGGGa -3'
miRNA:   3'- -GUUCugGa---------AAGUG----------CCGCCGuGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 102107 0.67 0.861577
Target:  5'- uGGGGCCgccUugGGCGGCuuaaUCAGGa -3'
miRNA:   3'- gUUCUGGaaaGugCCGCCGug--GGUCC- -5'
2894 3' -55.4 NC_001493.1 + 93796 0.67 0.853793
Target:  5'- aCGAGGCCgugacCACGGCuGGUuuCUCGGGu -3'
miRNA:   3'- -GUUCUGGaaa--GUGCCG-CCGu-GGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.