miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 3' -44.6 NC_006146.1 + 32360 0.66 1
Target:  5'- -cGAGgUAGGAUAGgg-GgGC-ACCCg -3'
miRNA:   3'- guUUCgAUCCUAUCauaUgUGaUGGG- -5'
28940 3' -44.6 NC_006146.1 + 68730 0.66 1
Target:  5'- gAGAGCUgucgcGGGGUGGUGgag---GCCCa -3'
miRNA:   3'- gUUUCGA-----UCCUAUCAUaugugaUGGG- -5'
28940 3' -44.6 NC_006146.1 + 59127 0.66 1
Target:  5'- gGGAGCUauagGGGAcGGUuucuCGCUgGCCCg -3'
miRNA:   3'- gUUUCGA----UCCUaUCAuau-GUGA-UGGG- -5'
28940 3' -44.6 NC_006146.1 + 93147 0.66 0.999999
Target:  5'- ---cGCUAGGGccucugcgGCACUAUCCg -3'
miRNA:   3'- guuuCGAUCCUaucaua--UGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 153909 0.66 0.999999
Target:  5'- -cGAGCUuccAGGAgagGGUGUAgG-UACCCu -3'
miRNA:   3'- guUUCGA---UCCUa--UCAUAUgUgAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 29358 0.66 0.999999
Target:  5'- gGGGGCUgaGGGGUGag--GCGCUGCUCc -3'
miRNA:   3'- gUUUCGA--UCCUAUcauaUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 165093 0.66 0.999999
Target:  5'- aAGAGCUGGGAcuggcccagacuaUGGUcUGCGCUGuuUu -3'
miRNA:   3'- gUUUCGAUCCU-------------AUCAuAUGUGAUggG- -5'
28940 3' -44.6 NC_006146.1 + 162836 0.66 0.999999
Target:  5'- --uAGUUAGG-UAGcAUAUGCUAUCCu -3'
miRNA:   3'- guuUCGAUCCuAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162915 0.66 0.999999
Target:  5'- --cAGCUGGG-UAGUAUAUGCUGu-- -3'
miRNA:   3'- guuUCGAUCCuAUCAUAUGUGAUggg -5'
28940 3' -44.6 NC_006146.1 + 149823 0.66 0.999998
Target:  5'- -cAGGCUccGGGUGGUGUGgGCgGCCa -3'
miRNA:   3'- guUUCGAu-CCUAUCAUAUgUGaUGGg -5'
28940 3' -44.6 NC_006146.1 + 37117 0.66 0.999998
Target:  5'- ---uGCaugGGGAUGGUGgguaGCUGCCUc -3'
miRNA:   3'- guuuCGa--UCCUAUCAUaug-UGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 162888 0.66 0.999998
Target:  5'- ----aUUGGGGUAGcAUAUGCUAUCCu -3'
miRNA:   3'- guuucGAUCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 35882 0.67 0.999997
Target:  5'- uGGAGUgGGGGUGGUGgggugACGCggACCa -3'
miRNA:   3'- gUUUCGaUCCUAUCAUa----UGUGa-UGGg -5'
28940 3' -44.6 NC_006146.1 + 81069 0.67 0.999997
Target:  5'- aCAAAGUguUGGGGUgccaAGUGgugcgugugugguUACaACUGCCCa -3'
miRNA:   3'- -GUUUCG--AUCCUA----UCAU-------------AUG-UGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 133831 0.67 0.999997
Target:  5'- gGGGGUgAGGAUGGUGggcccagACGCaGCCUc -3'
miRNA:   3'- gUUUCGaUCCUAUCAUa------UGUGaUGGG- -5'
28940 3' -44.6 NC_006146.1 + 135419 0.67 0.999997
Target:  5'- -cAGGCUGGuGGcugguGUAUGCAC-ACCCc -3'
miRNA:   3'- guUUCGAUC-CUau---CAUAUGUGaUGGG- -5'
28940 3' -44.6 NC_006146.1 + 8947 0.67 0.999996
Target:  5'- uGGGGCUGGGGaAGUuuaGCcuGCUGCCa -3'
miRNA:   3'- gUUUCGAUCCUaUCAua-UG--UGAUGGg -5'
28940 3' -44.6 NC_006146.1 + 65292 0.67 0.999996
Target:  5'- --cGGCUGuGGAccuGgcUGCGCUGCCUc -3'
miRNA:   3'- guuUCGAU-CCUau-CauAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 69623 0.67 0.999996
Target:  5'- -uGGGC-AGGAUgAGgaacagGUugACUGCCCc -3'
miRNA:   3'- guUUCGaUCCUA-UCa-----UAugUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 89459 0.67 0.999995
Target:  5'- uGAAGCUGGuGGUuGUuUGCcACUACCa -3'
miRNA:   3'- gUUUCGAUC-CUAuCAuAUG-UGAUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.