miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 19295 0.66 0.68366
Target:  5'- cGGUGGaGcGGGuCACGCGCCgcuccaucaugGGCUacGGCa -3'
miRNA:   3'- -UCACCcCuCCC-GUGUGCGG-----------UCGA--CCG- -5'
28944 3' -61.9 NC_006146.1 + 70486 0.66 0.68366
Target:  5'- cGUGGaGAgugucaGGGCGCGgGUCAGCUcGGUu -3'
miRNA:   3'- uCACCcCU------CCCGUGUgCGGUCGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 39926 0.66 0.68366
Target:  5'- gGGUGGGGGaaguaucuGGGCGCcuccugacccugAUGacaCGGCUGGg -3'
miRNA:   3'- -UCACCCCU--------CCCGUG------------UGCg--GUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 51174 0.66 0.68366
Target:  5'- uGUGGGuGuggaaGGGGguC-UGCgGGCUGGCg -3'
miRNA:   3'- uCACCC-C-----UCCCguGuGCGgUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 146020 0.66 0.682685
Target:  5'- --aGGGGcaggGGGGCagcuccuggcacuGCGCGuCCAGCUGcaGCa -3'
miRNA:   3'- ucaCCCC----UCCCG-------------UGUGC-GGUCGAC--CG- -5'
28944 3' -61.9 NC_006146.1 + 83638 0.66 0.677808
Target:  5'- uGGUGGcGGGGGCucuGCGgGCCagaccuccaccuuugGGUUGGCc -3'
miRNA:   3'- -UCACCcCUCCCG---UGUgCGG---------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 151400 0.66 0.673899
Target:  5'- cAGgcgGGGGAuGGCGCgGCGgCAGCUGu- -3'
miRNA:   3'- -UCa--CCCCUcCCGUG-UGCgGUCGACcg -5'
28944 3' -61.9 NC_006146.1 + 2481 0.66 0.673899
Target:  5'- uGUGGccGGcGGGgGCAgG-CAGCUGGCc -3'
miRNA:   3'- uCACC--CCuCCCgUGUgCgGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 79632 0.66 0.673899
Target:  5'- --cGGGGAcaGGGuCACAgGCCGGC-GaGCc -3'
miRNA:   3'- ucaCCCCU--CCC-GUGUgCGGUCGaC-CG- -5'
28944 3' -61.9 NC_006146.1 + 30366 0.66 0.667047
Target:  5'- -uUGGGGugccgucccucccAGGGCuagguuugcuguaggGC-CGCCAGgUGGCg -3'
miRNA:   3'- ucACCCC-------------UCCCG---------------UGuGCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 61675 0.66 0.664106
Target:  5'- aGGUGGagagaGGGGGGCACGgguuggggaccgcCGCCAGUccagcccucugucugGGCc -3'
miRNA:   3'- -UCACC-----CCUCCCGUGU-------------GCGGUCGa--------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 22236 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 113971 0.66 0.664106
Target:  5'- gAGgGGGGugcccgGGGGCucCGCGUUguugaaggAGCUGGCg -3'
miRNA:   3'- -UCaCCCC------UCCCGu-GUGCGG--------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 28392 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 16080 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 19158 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 25314 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 3264 0.66 0.664106
Target:  5'- -cUGGGGAcGGCGCAgGCCAcgaGCcGGg -3'
miRNA:   3'- ucACCCCUcCCGUGUgCGGU---CGaCCg -5'
28944 3' -61.9 NC_006146.1 + 13002 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 128090 0.66 0.661164
Target:  5'- aGGUGcGGGAGGGgccgaggcaggggaCAaugGCGuCCAGgaGGCg -3'
miRNA:   3'- -UCAC-CCCUCCC--------------GUg--UGC-GGUCgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.