miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 3' -50 NC_001493.1 + 84414 0.66 0.99737
Target:  5'- cUCAAGAUuucccCGACGACCagugGAUCGgugaGGCUc -3'
miRNA:   3'- -AGUUCUA-----GCUGUUGGa---CUGGCa---CUGG- -5'
2895 3' -50 NC_001493.1 + 92971 0.66 0.996886
Target:  5'- gUCGGGuggGGCGAgCUcGACCGUGAgCg -3'
miRNA:   3'- -AGUUCuagCUGUUgGA-CUGGCACUgG- -5'
2895 3' -50 NC_001493.1 + 133619 0.66 0.996886
Target:  5'- ---cGGUCGGgGGCCUGggugccGCCGUGAa- -3'
miRNA:   3'- aguuCUAGCUgUUGGAC------UGGCACUgg -5'
2895 3' -50 NC_001493.1 + 45727 0.66 0.996886
Target:  5'- cCGAGAUCGACucCCUGgagcucuuuuacACCaacGACCc -3'
miRNA:   3'- aGUUCUAGCUGuuGGAC------------UGGca-CUGG- -5'
2895 3' -50 NC_001493.1 + 18064 0.66 0.996886
Target:  5'- ---cGGUCGGgGGCCUGggugccGCCGUGAa- -3'
miRNA:   3'- aguuCUAGCUgUUGGAC------UGGCACUgg -5'
2895 3' -50 NC_001493.1 + 128144 0.66 0.996886
Target:  5'- cCAGGAgaugguaucgUGGCGACUccgaucGGCCGUGAUCg -3'
miRNA:   3'- aGUUCUa---------GCUGUUGGa-----CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 12590 0.66 0.996886
Target:  5'- cCAGGAgaugguaucgUGGCGACUccgaucGGCCGUGAUCg -3'
miRNA:   3'- aGUUCUa---------GCUGUUGGa-----CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 109846 0.66 0.996886
Target:  5'- cUCGAGcgCGcccgggGCGAUgUGACCGuUGACa -3'
miRNA:   3'- -AGUUCuaGC------UGUUGgACUGGC-ACUGg -5'
2895 3' -50 NC_001493.1 + 55060 0.66 0.996672
Target:  5'- cCGAGAacugugaugguggCGGCGggGCgCUGACCGUGGgCg -3'
miRNA:   3'- aGUUCUa------------GCUGU--UG-GACUGGCACUgG- -5'
2895 3' -50 NC_001493.1 + 118822 0.66 0.996329
Target:  5'- aCGAGAagGAUgaggAACCgggcaccGGCCGUGACg -3'
miRNA:   3'- aGUUCUagCUG----UUGGa------CUGGCACUGg -5'
2895 3' -50 NC_001493.1 + 49676 0.66 0.996329
Target:  5'- aCugGAUUGGCggUUUGugCGUG-CCu -3'
miRNA:   3'- aGuuCUAGCUGuuGGACugGCACuGG- -5'
2895 3' -50 NC_001493.1 + 3268 0.66 0.996329
Target:  5'- aCGAGAagGAUgaggAACCgggcaccGGCCGUGACg -3'
miRNA:   3'- aGUUCUagCUG----UUGGa------CUGGCACUGg -5'
2895 3' -50 NC_001493.1 + 81881 0.66 0.996329
Target:  5'- aCAGGAUC---AAUCUGcUCGUGGCCa -3'
miRNA:   3'- aGUUCUAGcugUUGGACuGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 131631 0.66 0.995693
Target:  5'- aCGAGGUCGAUGGguuuuuccgcCCUGuCCGcGAUCa -3'
miRNA:   3'- aGUUCUAGCUGUU----------GGACuGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 1930 0.66 0.995693
Target:  5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3'
miRNA:   3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 16077 0.66 0.995693
Target:  5'- aCGAGGUCGAUGGguuuuuccgcCCUGuCCGcGAUCa -3'
miRNA:   3'- aGUUCUAGCUGUU----------GGACuGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 63471 0.66 0.995693
Target:  5'- gCGGGAUCGACcgacACCg--UgGUGACCa -3'
miRNA:   3'- aGUUCUAGCUGu---UGGacuGgCACUGG- -5'
2895 3' -50 NC_001493.1 + 23199 0.66 0.995693
Target:  5'- uUCGGGA-CGACGAgUUUGGCCG-GGCUc -3'
miRNA:   3'- -AGUUCUaGCUGUU-GGACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 117484 0.66 0.995693
Target:  5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3'
miRNA:   3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 17847 0.66 0.99527
Target:  5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3'
miRNA:   3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.