Results 61 - 80 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 41775 | 0.73 | 0.25526 |
Target: 5'- gGAGGCCcUGC-GCCCGGGCgcccgcucuCAGGCCc -3' miRNA: 3'- gCUCCGGaGUGuCGGGUCCG---------GUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 40863 | 0.73 | 0.26054 |
Target: 5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3' miRNA: 3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 22945 | 0.73 | 0.261132 |
Target: 5'- --cGGCCUCuCGGUccaCCAGGCC-GGCCg -3' miRNA: 3'- gcuCCGGAGuGUCG---GGUCCGGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 158820 | 0.73 | 0.267114 |
Target: 5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3' miRNA: 3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 122517 | 0.73 | 0.271366 |
Target: 5'- gGAGGCCgCGgAGCCCGGGugguucgcggaacuCgAGGCCg -3' miRNA: 3'- gCUCCGGaGUgUCGGGUCC--------------GgUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 142543 | 0.73 | 0.273205 |
Target: 5'- gGAGGUgguugcggUGCAGCCUAGGCUAGGCg -3' miRNA: 3'- gCUCCGga------GUGUCGGGUCCGGUCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 54242 | 0.73 | 0.273205 |
Target: 5'- aGA-GCCUCuggGCGGCCCcGGUCAGGCg -3' miRNA: 3'- gCUcCGGAG---UGUCGGGuCCGGUCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 43321 | 0.73 | 0.273205 |
Target: 5'- --cGGCCggCGCGGCCUcGGCCgcccaGGGCCa -3' miRNA: 3'- gcuCCGGa-GUGUCGGGuCCGG-----UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 115981 | 0.73 | 0.273205 |
Target: 5'- uCGAGGCCUacugcCGGUCCcugaAGGCC-GGCCa -3' miRNA: 3'- -GCUCCGGAgu---GUCGGG----UCCGGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 132221 | 0.72 | 0.279408 |
Target: 5'- -cAGGCCUUuaagGCAGCUCucgcGGCCGGGCa -3' miRNA: 3'- gcUCCGGAG----UGUCGGGu---CCGGUCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 115134 | 0.72 | 0.279408 |
Target: 5'- gGuGGCCUCGCuGCCCcuGGCCc-GCCg -3' miRNA: 3'- gCuCCGGAGUGuCGGGu-CCGGucCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 49552 | 0.72 | 0.279408 |
Target: 5'- gGAGGCCaCGCcGgCCAGGCCcagcauGGCCu -3' miRNA: 3'- gCUCCGGaGUGuCgGGUCCGGu-----CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 56529 | 0.72 | 0.279408 |
Target: 5'- --cGGCCaUCAgCAGCUgacgcgucacgCGGGCCAGGCCc -3' miRNA: 3'- gcuCCGG-AGU-GUCGG-----------GUCCGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 105140 | 0.72 | 0.285722 |
Target: 5'- gCGAGGCCUCcucuaacgagACcGCCgCAGGUaagAGGCCg -3' miRNA: 3'- -GCUCCGGAG----------UGuCGG-GUCCGg--UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 41612 | 0.72 | 0.292148 |
Target: 5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3' miRNA: 3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 164462 | 0.72 | 0.298687 |
Target: 5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3' miRNA: 3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 14819 | 0.72 | 0.298687 |
Target: 5'- -cGGGCCggaggagggCACGGUCuCGGGCCcgGGGCCg -3' miRNA: 3'- gcUCCGGa--------GUGUCGG-GUCCGG--UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 42018 | 0.72 | 0.298687 |
Target: 5'- cCGAGcuacucCCUCugGGCCCGGGCuCAcGCCg -3' miRNA: 3'- -GCUCc-----GGAGugUCGGGUCCG-GUcCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 60622 | 0.72 | 0.305339 |
Target: 5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3' miRNA: 3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 146766 | 0.72 | 0.305339 |
Target: 5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3' miRNA: 3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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