miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 87620 0.65 0.871449
Target:  5'- cGUCCGcgccgguagugcccGUCGAgucuucggaugacUCCGCCCGUggAGCCGgCu -3'
miRNA:   3'- -CAGGC--------------CAGCU-------------AGGUGGGCG--UUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 30511 0.66 0.867058
Target:  5'- uGUCCGGggCGAUCC-CCCuu-GCCGUCa -3'
miRNA:   3'- -CAGGCCa-GCUAGGuGGGcguUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 105978 0.66 0.867058
Target:  5'- -gCgGGUCGGaagUCACCCGUcACCuCCa -3'
miRNA:   3'- caGgCCAGCUa--GGUGGGCGuUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 17585 0.66 0.866319
Target:  5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3'
miRNA:   3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5'
2899 5' -57.3 NC_001493.1 + 133139 0.66 0.866319
Target:  5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3'
miRNA:   3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5'
2899 5' -57.3 NC_001493.1 + 128209 0.66 0.862593
Target:  5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3'
miRNA:   3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 12655 0.66 0.862593
Target:  5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3'
miRNA:   3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 130004 0.66 0.859575
Target:  5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3'
miRNA:   3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 31518 0.66 0.859575
Target:  5'- --aCGGaCGcugcaaCCGCCCGCGcCCACCu -3'
miRNA:   3'- cagGCCaGCua----GGUGGGCGUuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14450 0.66 0.859575
Target:  5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3'
miRNA:   3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 13441 0.66 0.854218
Target:  5'- -gCCGGUagcCGAUCUcgcaucucuuucuguGCCCGCAcgcgaagAUCACCc -3'
miRNA:   3'- caGGCCA---GCUAGG---------------UGGGCGU-------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 128995 0.66 0.854218
Target:  5'- -gCCGGUagcCGAUCUcgcaucucuuucuguGCCCGCAcgcgaagAUCACCc -3'
miRNA:   3'- caGGCCA---GCUAGG---------------UGGGCGU-------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 23106 0.66 0.851892
Target:  5'- -aUCGGUCGAuacgugacccUCCACCaaCAACCucuCCa -3'
miRNA:   3'- caGGCCAGCU----------AGGUGGgcGUUGGu--GG- -5'
2899 5' -57.3 NC_001493.1 + 62875 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 63121 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 62959 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 48526 0.66 0.844013
Target:  5'- -cCCGGUaGAgguuucugUCCGCCgGCGucgcguCCACCg -3'
miRNA:   3'- caGGCCAgCU--------AGGUGGgCGUu-----GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 107217 0.66 0.835947
Target:  5'- -cCCGG-CGGUCgACCUgaggGCGGCC-CCg -3'
miRNA:   3'- caGGCCaGCUAGgUGGG----CGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 9885 0.66 0.835947
Target:  5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3'
miRNA:   3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 125439 0.66 0.835947
Target:  5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3'
miRNA:   3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.