miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 3' -51.5 NC_006146.1 + 63093 0.66 0.991404
Target:  5'- cUUGGUaCGCAGAAGGGGCccUGUAc--- -3'
miRNA:   3'- uAACCG-GCGUUUUUCCCG--ACAUcucc -5'
28996 3' -51.5 NC_006146.1 + 121204 0.66 0.991404
Target:  5'- -gUGGCCccuGGAGAGGGUgGaGGAGGa -3'
miRNA:   3'- uaACCGGcg-UUUUUCCCGaCaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 101932 0.66 0.991404
Target:  5'- -gUGGCCGCG---GGGGCgGUGaccgauGAGa -3'
miRNA:   3'- uaACCGGCGUuuuUCCCGaCAU------CUCc -5'
28996 3' -51.5 NC_006146.1 + 42543 0.66 0.991404
Target:  5'- --gGGaaGCAGAcGGGGg-GUGGGGGg -3'
miRNA:   3'- uaaCCggCGUUUuUCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 53345 0.66 0.991404
Target:  5'- --cGGCCGC----GGGGCggcGU-GAGGu -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa--CAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 166684 0.66 0.991285
Target:  5'- -gUGGCCugGCAGGGgggagacGGGGCaaugGGAGGg -3'
miRNA:   3'- uaACCGG--CGUUUU-------UCCCGaca-UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 107482 0.66 0.990288
Target:  5'- -aUGGCCGCGcuGAGGGCcgccacugcgcuaaaGUAGuAGa -3'
miRNA:   3'- uaACCGGCGUuuUUCCCGa--------------CAUC-UCc -5'
28996 3' -51.5 NC_006146.1 + 37873 0.66 0.990157
Target:  5'- --aGGCauagaGCAGGccGGGCUGggAGAGu -3'
miRNA:   3'- uaaCCGg----CGUUUuuCCCGACa-UCUCc -5'
28996 3' -51.5 NC_006146.1 + 5238 0.66 0.990157
Target:  5'- --cGGCCuC----GGGGCUGUGGGGu -3'
miRNA:   3'- uaaCCGGcGuuuuUCCCGACAUCUCc -5'
28996 3' -51.5 NC_006146.1 + 33213 0.66 0.990157
Target:  5'- --aGGCCGgAGGGggagccgggauGGGGCUGggguuccGGGGGu -3'
miRNA:   3'- uaaCCGGCgUUUU-----------UCCCGACa------UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 141581 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 144659 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 147736 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 150814 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 153892 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 156970 0.66 0.990157
Target:  5'- --gGGCCuCGGGGAGGGag--AGAGGa -3'
miRNA:   3'- uaaCCGGcGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 158288 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 157848 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 155209 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 148615 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.