miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 126387 0.66 0.919963
Target:  5'- cCGCCCGucAGCcugaaACCccgGACgCCCGGGg -3'
miRNA:   3'- cGCGGGUuaUCGag---UGG---UUG-GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 125424 0.66 0.919963
Target:  5'- -aGUCCAGUAGCgCAUUGGCUCUGGc -3'
miRNA:   3'- cgCGGGUUAUCGaGUGGUUGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 132734 0.66 0.919963
Target:  5'- uGUcCCCAGUAGC-C-CCGguuCUCCGGGg -3'
miRNA:   3'- -CGcGGGUUAUCGaGuGGUu--GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 15935 0.66 0.919963
Target:  5'- gGCGCCUgggcgaggcugGGUGGCUgggcagGCCggUCUCGGGu -3'
miRNA:   3'- -CGCGGG-----------UUAUCGAg-----UGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 17699 0.66 0.919963
Target:  5'- gGCGgCCcGUGGCg-GCCAagcGCCUgGGGg -3'
miRNA:   3'- -CGCgGGuUAUCGagUGGU---UGGGgCCC- -5'
29002 3' -56.7 NC_006146.1 + 90600 0.66 0.919963
Target:  5'- cGCGgCUGAaucuuucuuGCUC-CCucGCCCCGGGg -3'
miRNA:   3'- -CGCgGGUUau-------CGAGuGGu-UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 23925 0.66 0.916613
Target:  5'- uGCGCCCAGcccCUCcugccCCAAgggcggcgacuuuccCCCCGGGu -3'
miRNA:   3'- -CGCGGGUUaucGAGu----GGUU---------------GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 160227 0.66 0.914334
Target:  5'- aUGCCCGcgGGU--AUC-GCCCCGGGc -3'
miRNA:   3'- cGCGGGUuaUCGagUGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 158879 0.66 0.914334
Target:  5'- cCGCCacGUAGCU-GCCggUCUCGGGc -3'
miRNA:   3'- cGCGGguUAUCGAgUGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 96635 0.66 0.914334
Target:  5'- cCGCaacc-GGCUCuuugGCCAGCCCgGGGa -3'
miRNA:   3'- cGCGgguuaUCGAG----UGGUUGGGgCCC- -5'
29002 3' -56.7 NC_006146.1 + 43339 0.66 0.914334
Target:  5'- cCGCCCAGggccAGCagGCgCAGCCCguggcaGGGg -3'
miRNA:   3'- cGCGGGUUa---UCGagUG-GUUGGGg-----CCC- -5'
29002 3' -56.7 NC_006146.1 + 127556 0.66 0.914334
Target:  5'- cUGCCacg-GGCUgCGCCugcuGGCCCUGGGc -3'
miRNA:   3'- cGCGGguuaUCGA-GUGG----UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 78396 0.66 0.914334
Target:  5'- -aGCCUcAUGGCUCaacccacucugaGCCAccuucaaccCCCCGGGc -3'
miRNA:   3'- cgCGGGuUAUCGAG------------UGGUu--------GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 137001 0.66 0.914334
Target:  5'- -aGCuCCAGgacgggGGUagGCCGggcacACCCCGGGg -3'
miRNA:   3'- cgCG-GGUUa-----UCGagUGGU-----UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 36191 0.66 0.914334
Target:  5'- -gGCCCA--AGUUCucagacACCugggcuCCCCGGGa -3'
miRNA:   3'- cgCGGGUuaUCGAG------UGGuu----GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 55387 0.66 0.914334
Target:  5'- -aGCgCAAUGGCaCGCU-GCUCCGGGa -3'
miRNA:   3'- cgCGgGUUAUCGaGUGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 24684 0.66 0.914334
Target:  5'- uGCaGCC--AUGGC-CGCCGcuuACCCCGGa -3'
miRNA:   3'- -CG-CGGguUAUCGaGUGGU---UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 43960 0.66 0.914334
Target:  5'- cGCGCCCGGagAGC--GCCAuccuGCCagCGGGa -3'
miRNA:   3'- -CGCGGGUUa-UCGagUGGU----UGGg-GCCC- -5'
29002 3' -56.7 NC_006146.1 + 139454 0.66 0.910847
Target:  5'- gGUGCCCGGgggGGUgccugCACUggagaaggucuccacGGCaCCCGGGg -3'
miRNA:   3'- -CGCGGGUUa--UCGa----GUGG---------------UUG-GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 9477 0.66 0.908476
Target:  5'- cGCGCCCucUGGC--AUCAGCCaCUGGa -3'
miRNA:   3'- -CGCGGGuuAUCGagUGGUUGG-GGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.