miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 168324 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 135110 0.66 0.939307
Target:  5'- uUCCCAGgguUugGguuugcuccGGCGGGgggUGGCCGGg -3'
miRNA:   3'- gAGGGUC---GugCa--------UCGUCCa--AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 169256 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 170187 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167392 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70227 0.66 0.93442
Target:  5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3'
miRNA:   3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5'
29002 5' -55.3 NC_006146.1 + 43356 0.66 0.93442
Target:  5'- -gCgCAGCcCGUGGCAGGgggUGGCUu- -3'
miRNA:   3'- gaGgGUCGuGCAUCGUCCa--AUCGGuc -5'
29002 5' -55.3 NC_006146.1 + 27336 0.66 0.93442
Target:  5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3'
miRNA:   3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 109589 0.66 0.93442
Target:  5'- gUCgUAGCACuUGGaCAGGacGGCCAGg -3'
miRNA:   3'- gAGgGUCGUGcAUC-GUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 112488 0.66 0.93442
Target:  5'- -cCCCGGCGCGcucauagagaUAGCGGuccaggGGCCGGu -3'
miRNA:   3'- gaGGGUCGUGC----------AUCGUCcaa---UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 68093 0.66 0.92929
Target:  5'- -cCCCcGCGCGauccAGguGGgcGGCCAGc -3'
miRNA:   3'- gaGGGuCGUGCa---UCguCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 148303 0.66 0.92929
Target:  5'- -cUCCAGCAgG-AGCGcGGagAGCCAGa -3'
miRNA:   3'- gaGGGUCGUgCaUCGU-CCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 155138 0.66 0.92929
Target:  5'- gUCCCcGCgGCGUcgcAGCAGcg-GGCCAGg -3'
miRNA:   3'- gAGGGuCG-UGCA---UCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 114241 0.66 0.923918
Target:  5'- -gCCCGGCACcu--CAGGgagGGCCAGc -3'
miRNA:   3'- gaGGGUCGUGcaucGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 102552 0.66 0.923918
Target:  5'- uCUCCaCAGagGCGUccagcAGCAGGUccgAGCCGa -3'
miRNA:   3'- -GAGG-GUCg-UGCA-----UCGUCCAa--UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 100216 0.66 0.920578
Target:  5'- uUCCCAGCGCagaaaguucagcuccGUGGCAGuGggGGCg-- -3'
miRNA:   3'- gAGGGUCGUG---------------CAUCGUC-CaaUCGguc -5'
29002 5' -55.3 NC_006146.1 + 132895 0.66 0.918303
Target:  5'- --gUgAGCaACGUGGCAGGU--GCCGGg -3'
miRNA:   3'- gagGgUCG-UGCAUCGUCCAauCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 75756 0.66 0.918303
Target:  5'- gUCUCAGguCGccgGGCuucGGUUGGCCAc -3'
miRNA:   3'- gAGGGUCguGCa--UCGu--CCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 34159 0.66 0.918303
Target:  5'- -cCCCGGCGaggGUGGgGGGUgcgcccccAGCCGGa -3'
miRNA:   3'- gaGGGUCGUg--CAUCgUCCAa-------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 108543 0.66 0.912447
Target:  5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3'
miRNA:   3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.