miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 8721 0.66 0.880042
Target:  5'- -cAGCCUacggggaCCGUGGAuagCCUAUGCu- -3'
miRNA:   3'- uaUCGGAg------GGCACCUua-GGGUGCGuc -5'
29011 5' -57.2 NC_006146.1 + 127747 0.66 0.877208
Target:  5'- -gAGCCUCCCGgaaaacgucguugGGGAgauugCCCugcUGCAGc -3'
miRNA:   3'- uaUCGGAGGGCa------------CCUUa----GGGu--GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 80548 0.66 0.872894
Target:  5'- -gAGCgUCCCGUGGua-CCCGagaccuaaugaGCAGg -3'
miRNA:   3'- uaUCGgAGGGCACCuuaGGGUg----------CGUC- -5'
29011 5' -57.2 NC_006146.1 + 100903 0.66 0.872894
Target:  5'- -gGGUCUCggCCGUGGggUCCC-CGa-- -3'
miRNA:   3'- uaUCGGAG--GGCACCuuAGGGuGCguc -5'
29011 5' -57.2 NC_006146.1 + 147991 0.66 0.872894
Target:  5'- cAUGGCC-CUCGUGGGGccuUCCC-UGCAc -3'
miRNA:   3'- -UAUCGGaGGGCACCUU---AGGGuGCGUc -5'
29011 5' -57.2 NC_006146.1 + 40401 0.66 0.872894
Target:  5'- aGUAGCCUCCCGcGGGGgcaaaguagCCACcCGGg -3'
miRNA:   3'- -UAUCGGAGGGCaCCUUag-------GGUGcGUC- -5'
29011 5' -57.2 NC_006146.1 + 112801 0.66 0.872894
Target:  5'- --uGCCUCCCGUuGcgcCCCACGUAc -3'
miRNA:   3'- uauCGGAGGGCAcCuuaGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 117098 0.66 0.865533
Target:  5'- -cAGCCcCCCGcuaUGGAcg-CCGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGC---ACCUuagGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 156710 0.66 0.865533
Target:  5'- --cGCCUcCCCGUccaggcuccgGGggUCCagccugGCGCAGa -3'
miRNA:   3'- uauCGGA-GGGCA----------CCuuAGGg-----UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 71774 0.66 0.861016
Target:  5'- -gAGCC-CCUGUGGAGacgCCUgaggccggagggcagGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGCACCUUa--GGG---------------UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 78801 0.66 0.857964
Target:  5'- -cAGCaauaCUCCC-UGGGAggCCCACGCGu -3'
miRNA:   3'- uaUCG----GAGGGcACCUUa-GGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 41763 0.66 0.857964
Target:  5'- -gGGCUUCCCGccGGAggCCCuGCGCc- -3'
miRNA:   3'- uaUCGGAGGGCa-CCUuaGGG-UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 5068 0.66 0.857964
Target:  5'- -gGGCUggCCGuUGGAGgcgUCCACGCGGc -3'
miRNA:   3'- uaUCGGagGGC-ACCUUa--GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 151192 0.66 0.857964
Target:  5'- -cGGCCUccuccCCCGUGGA--CCagaggACGCAGg -3'
miRNA:   3'- uaUCGGA-----GGGCACCUuaGGg----UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 123271 0.66 0.850193
Target:  5'- -cGGCCagagacggCUCGUGGcccuaucggcGAUCCCugGCGGc -3'
miRNA:   3'- uaUCGGa-------GGGCACC----------UUAGGGugCGUC- -5'
29011 5' -57.2 NC_006146.1 + 55138 0.66 0.850193
Target:  5'- -cGGCCUCCgGUGGGggCacgauaaagaUGCGCAGg -3'
miRNA:   3'- uaUCGGAGGgCACCUuaGg---------GUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 167557 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 169421 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 170352 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 168489 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.